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nucleocapsid_protein

Euk-Vir

Avian_paramyxovirus_goose_Shimane_67_2000

nucleocapsid_protein__BAV03980__Avian_paramyxovirus_goose_Shimane_67_2000__1401445

Identity

Accession:
BAV03980 ↗
Protein ID:
nucleocapsid_protein
Kingdom:
euk

Quality

74.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Orthoavulavirus› avian_paramyxovirus_13

TaxID: 1401445

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-10_264-324
PDB
Domain cluster: rep: N_protein__YP_010085016__Pohorje_myodes_paramyxovirus_1__2116604__D281-361
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 90.2 2.00e-25 94.4% 15.2%
D2 medium residues 32-146
PDB
Domain cluster: rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 95.9 3.50e-27 100.0% 28.5%
D3 medium residues 147-263
PDB
Domain cluster: rep: nucleocapsid_protein__YP_009512957__Feline_morbillivirus__1170234__D152-264
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 134.1 9.30e-39 100.0% 28.7%
D4 medium residues 325-400
PDB
Domain cluster: rep: N_protein__YP_010085016__Pohorje_myodes_paramyxovirus_1__2116604__D362-418
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00973.26 best Paramyxo_ncap 87.4 1.40e-24 100.0% 18.8%