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nucleocapsid_protein
Euk-VirInfectious_bronchitis_virus
nucleocapsid_protein__NP_040838__Infectious_bronchitis_virus__11120
Identity
- Accession:
- NP_040838 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
65.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Gammacoronavirus›
Infectious_bronchitis_virus
TaxID: 11120
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 216-323
Domain cluster:
rep: nucleocapsid_protein__YP_005352875__Wigeon_coronavirus_HKU20__1159908__D197-280
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 82.9 | 3.50e-23 | 100.0% | 28.5% |
D2
medium
residues 24-159
Domain cluster:
rep: nucleoprotein__YP_009199247__Swine_enteric_coronavirus__1766554__D39-151
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 142.1 | 3.30e-41 | 97.8% | 35.8% |