nucleocapsid_protein

Euk-Vir

Murine_hepatitis_virus

nucleocapsid_protein__NP_045302__Murine_hepatitis_virus__11138

Identity

63.7 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Betacoronavirus› Murine_hepatitis_virus

TaxID: 11138

View cluster (21 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 254-319_356-380

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00937.24 best	CoV_nucleocap	72.5	4.90e-20	78.0%	18.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4k08A00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.51	36.0	3.10e-01	72.5%	65.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2640297	808.1.1.1 ↗	a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap	0.95	83.0	7.54e-01	91.2%	97.4%
4875689	808.1.1.1 ↗	a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap	0.86	73.0	6.93e-01	87.9%	100.0%
4028504	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.53	32.0	3.21e-01	75.8%	56.8%

D2 medium residues 65-192

PDB

Domain cluster: rep: nucleoprotein__YP_009199247__Swine_enteric_coronavirus__1766554__D39-151

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00937.24 best	CoV_nucleocap	142.5	2.70e-41	100.0%	35.8%