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nucleocapsid_protein
Euk-VirPorcine_epidemic_diarrhea_virus
nucleocapsid_protein__NP_598314__Porcine_epidemic_diarrhea_virus__28295
Identity
- Accession:
- NP_598314 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
66.3
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Alphacoronavirus›
Porcine_epidemic_diarrhea_virus
TaxID: 28295
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-137
Domain cluster:
rep: nucleoprotein__YP_009199247__Swine_enteric_coronavirus__1766554__D39-151
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 163.6 | 9.70e-48 | 100.0% | 36.9% |
D2
medium
residues 280-375
Domain cluster:
rep: nucleocapsid_protein__YP_005352875__Wigeon_coronavirus_HKU20__1159908__D197-280
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 100.3 | 1.70e-28 | 100.0% | 27.6% |