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nucleocapsid_protein
Euk-VirAllpahuayo_mammarenavirus
nucleocapsid_protein__YP_001649220__Allpahuayo_mammarenavirus__144752
Identity
- Accession:
- YP_001649220 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
79.1
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_allpahuayoense
TaxID: 144752
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 358-550
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17290.9 best | Arena_ncap_C | 247.0 | 1.10e-73 | 91.7% | 93.4% |
D2
medium
residues 1-128_164-187
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 169.9 | 1.00e-49 | 86.2% | 38.6% |
| PF00843.23 | Arena_nucleocap | 27.7 | 1.80e-06 | 16.4% | 7.2% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qbuA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.60 | 24.0 | 2.62e-01 | 86.8% | 41.7% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.54 | 29.0 | 3.84e-01 | 79.6% | 95.3% |
| 2e9xB02 | 1.20.58.1020 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 25.0 | 2.84e-01 | 93.4% | 59.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 406722 | 3248.1.1.1 ↗ | alpha complex topology › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › Arena_nucleocap | 0.94 | 89.0 | 6.63e-01 | 96.7% | 54.0% |
| 3270794 | 609.1.1.1 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg | 0.54 | 32.0 | 3.48e-01 | 82.9% | 67.7% |
| 3956020 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.51 | 39.0 | 3.57e-01 | 80.3% | 73.3% |