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nucleocapsid_protein

Euk-Vir

Avian_paramyxovirus_4

nucleocapsid_protein__YP_007008147__Avian_paramyxovirus_4__28274

Identity

Accession:: YP_007008147 ↗
Protein ID:: nucleocapsid_protein
Kingdom:: euk

Quality

74.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Paraavulavirus› avian_paramyxovirus_4

TaxID: 28274

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-157

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	65.8	5.10e-18	100.0%	30.8%

D2 medium residues 263-320

PDB

Domain cluster: rep: nucleocapsid_protein__YP_006347582__Nariva_virus__590647__D262-318

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	72.0	6.80e-20	100.0%	14.2%

D3 medium residues 321-390

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	84.5	1.00e-23	100.0%	17.2%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hehA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.63	42.0	4.06e-01	70.0%	69.9%
2jrmA00	1.10.10.620	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain	0.59	44.0	4.75e-01	100.0%	95.0%
1lrzA03	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	31.0	3.34e-01	85.7%	62.9%
2y39A00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.53	36.0	3.20e-01	72.9%	56.4%
1hm7B00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.52	40.0	2.76e-01	90.0%	46.6%
1vctA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.51	36.0	3.24e-01	78.6%	93.6%
1hs7A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	39.0	3.60e-01	88.6%	97.9%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2749214	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.77	66.0	4.09e-01	94.3%	16.9%
184677	6028.1.1.1 ↗	alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor › RMF	0.59	44.0	4.75e-01	100.0%	95.0%
4283760	1203.1.2.7 ↗	alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR	0.57	46.0	3.75e-01	92.9%	71.4%
4010267	192.8.1.131 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › GNVR	0.56	44.0	3.75e-01	91.4%	75.4%
3946576	5086.1.1.66 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR	0.56	44.0	3.69e-01	91.4%	72.6%
3743752	192.15.1.1 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28	0.56	34.0	3.26e-01	72.9%	50.6%
4545071	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.53	41.0	3.80e-01	88.6%	96.8%
3290939	191.1.1.26 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24	0.51	36.0	3.10e-01	78.6%	77.7%