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nucleocapsid_protein
Euk-VirBetacoronavirus_England_1
nucleocapsid_protein__YP_007188586__Betacoronavirus_England_1__1263720
Identity
- Accession:
- YP_007188586 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
64.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Betacoronavirus›
Betacoronavirus_England_1
TaxID: 1263720
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 236-299_335-360
Domain cluster:
rep: nucleocapsid_protein__NP_045302__Murine_hepatitis_virus__11138__D254-319_356-380
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 58.0 | 1.30e-15 | 72.2% | 18.0% |
D2
medium
residues 36-164
Domain cluster:
rep: nucleoprotein__YP_009199247__Swine_enteric_coronavirus__1766554__D39-151
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 160.5 | 8.50e-47 | 100.0% | 36.9% |