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nucleocapsid_protein
Euk-VirIsfahan_virus
nucleocapsid_protein__YP_007641382__Isfahan_virus__290008
Identity
- Accession:
- YP_007641382 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
90.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Vesiculovirus›
Isfahan_virus
TaxID: 290008
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 230-344_367-422
Domain cluster:
rep: nucleoprotein__YP_009094365__Almpiwar_virus__318843__D225-426
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 150.0 | 1.30e-43 | 69.6% | 27.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.99 | 97.0 | 9.17e-01 | 100.0% | 96.4% |
| 2gttJ02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.89 | 85.0 | 8.18e-01 | 100.0% | 96.3% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 32.0 | 3.78e-01 | 80.1% | 92.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.97 | 96.0 | 6.90e-01 | 100.0% | 44.0% |
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.93 | 62.0 | 4.66e-01 | 70.8% | 31.4% |
D2
medium
residues 35-129
Domain cluster:
rep: nucleoprotein__YP_010229214__Almendravirus_balsa__1972684__D37-133
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 68.2 | 9.60e-19 | 99.0% | 21.0% |
D3
medium
residues 130-229
Domain cluster:
rep: nucleocapsid_protein__YP_009094340__Scophthalmus_maximus_rhabdovirus__936149__D129-226_273-284
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 128.2 | 5.70e-37 | 100.0% | 24.1% |