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nucleocapsid_protein
Euk-VirGrass_carp_virus
nucleocapsid_protein__YP_009094263__Grass_carp_virus__1288359
Identity
- Accession:
- YP_009094263 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
87.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Sprivivirus›
grass_carp_rhabdovirus
TaxID: 1288359
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-218
Domain cluster:
rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 192.3 | 2.00e-56 | 100.0% | 45.1% |
D2
medium
residues 228-303
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 120.3 | 1.40e-34 | 100.0% | 18.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.98 | 95.0 | 6.70e-01 | 100.0% | 39.0% |
| 2gttJ02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.94 | 88.0 | 6.35e-01 | 100.0% | 40.0% |
| 5yc9B01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.60 | 32.0 | 2.95e-01 | 100.0% | 39.2% |
| 2wssW01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.50 | 37.0 | 3.55e-01 | 82.9% | 77.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.98 | 94.0 | 5.67e-01 | 100.0% | 19.0% |
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.95 | 91.0 | 5.56e-01 | 100.0% | 20.6% |
| 4951108 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.51 | 39.0 | 2.76e-01 | 85.5% | 80.4% |
D3
medium
residues 304-340_366-418
Domain cluster:
rep: nucleoprotein__YP_009505537__Vesiculovirus_radi__1972566__D376-428