←Back to structures
nucleocapsid_protein
Euk-VirGairo_mammarenavirus
nucleocapsid_protein__YP_009116791__Gairo_mammarenavirus__1535802
Identity
- Accession:
- YP_009116791 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
80.1
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_gairoense
TaxID: 1535802
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 369-561
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17290.9 best | Arena_ncap_C | 315.4 | 1.10e-94 | 91.7% | 97.2% |
D2
medium
residues 1-26_81-118_261-340
Domain cluster:
rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D1-21_80-113_255-329
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 149.0 | 2.20e-43 | 54.9% | 23.1% |
| PF00843.23 | Arena_nucleocap | 44.0 | 2.00e-11 | 28.5% | 11.4% |
D3
medium
residues 27-80_119-141_160-260
Domain cluster:
rep: nucleoprotein__YP_006858707__Lunk_virus_NKS-1__1134579__D27-82_171-257
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 191.5 | 2.70e-56 | 70.8% | 42.2% |
| PF00843.23 | Arena_nucleocap | 73.6 | 2.00e-20 | 32.6% | 15.9% |