nucleocapsid_protein

Euk-Vir

Mariental_mammarenavirus

nucleocapsid_protein__YP_009141004__Mariental_mammarenavirus__1642436

Identity

79.4 mean pLDDT

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Arenaviridae› Mammarenavirus› Mammarenavirus_marientalense

TaxID: 1642436

View cluster (26 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 377-558

PDB

Domain cluster: rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17290.9 best	Arena_ncap_C	293.4	6.30e-88	91.2%	90.1%

D2 medium residues 6-84_317-333

PDB

Domain cluster: rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D1-21_80-113_255-329

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00843.23 best	Arena_nucleocap	119.5	2.20e-34	82.3%	23.6%

D3 medium residues 85-139_276-316_361-376

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00843.23 best	Arena_nucleocap	76.7	2.30e-21	50.9%	16.2%
PF00843.23	Arena_nucleocap	61.6	8.70e-17	48.2%	12.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3t5qG01	1.10.150.550	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain	0.80	61.0	6.34e-01	94.6%	83.7%
1br0A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	33.0	3.27e-01	79.5%	51.7%
2oznB01	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.55	31.0	3.51e-01	80.4%	73.8%
1kn1B00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.52	34.0	3.05e-01	83.9%	44.7%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3464503	611.9.1.4 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N	0.57	40.0	3.74e-01	70.5%	83.7%
3944006	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.53	31.0	3.01e-01	76.8%	50.4%
3255531	632.7.1.25 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508	0.53	34.0	3.83e-01	81.2%	84.7%
4010416	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.52	30.0	2.97e-01	76.8%	50.4%
3549992	7004.1.1.0 ↗		0.52	39.0	3.99e-01	80.4%	85.6%
3272953	3930.1.1.0 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase	0.51	33.0	3.04e-01	95.5%	51.4%
3939112	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.50	39.0	3.20e-01	83.9%	73.6%

D4 medium residues 175-275

PDB

Domain cluster: rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D166-254

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00843.23 best	Arena_nucleocap	187.6	4.20e-55	100.0%	30.2%