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nucleocapsid_protein
Euk-VirOkahandja_mammarenavirus
nucleocapsid_protein__YP_009141006__Okahandja_mammarenavirus__1642458
Identity
- Accession:
- YP_009141006 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
79.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_okahandjaense
TaxID: 1642458
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 362-553
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17290.9 best | Arena_ncap_C | 290.4 | 5.30e-87 | 91.7% | 97.2% |
D2
medium
residues 8-91_167-265
Domain cluster:
rep: nucleoprotein__YP_006858707__Lunk_virus_NKS-1__1134579__D27-82_171-257
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 172.9 | 1.30e-50 | 55.2% | 29.6% |
| PF00843.23 | Arena_nucleocap | 127.1 | 1.10e-36 | 47.5% | 25.4% |
D3
medium
residues 92-117_266-336
Domain cluster:
rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D1-21_80-113_255-329
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 122.4 | 2.90e-35 | 73.2% | 21.0% |