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nucleocapsid_protein
Euk-VirChrysanthemum_stem_necrosis_virus
nucleocapsid_protein__YP_009162644__Chrysanthemum_stem_necrosis_virus__83871
Identity
- Accession:
- YP_009162644 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
73.1
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Tospoviridae›
Orthotospovirus›
Chrysanthemum_stem_necrosis_virus
TaxID: 83871
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-221
Domain cluster:
rep: nucleocapsid_protein__YP_009512924__Tete_orthobunyavirus__35319__D42-232
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01533.23 best | Tospo_nucleocap | 140.7 | 7.50e-41 | 100.0% | 76.7% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eslA02 | 1.25.40.930 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 36.0 | 4.42e-01 | 86.3% | 85.7% |
| 1sz9C00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 39.0 | 4.45e-01 | 90.0% | 90.7% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 32.0 | 3.84e-01 | 78.9% | 82.4% |
| 2yvyA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.56 | 33.0 | 3.94e-01 | 91.1% | 86.4% |
| 1lrvA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 28.0 | 2.68e-01 | 93.2% | 37.3% |
| 3bwtA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.54 | 34.0 | 2.87e-01 | 81.6% | 35.1% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.53 | 28.0 | 3.62e-01 | 75.8% | 91.4% |
| 5bz1A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 39.0 | 3.17e-01 | 91.1% | 39.9% |
| 7dvqK01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.50 | 34.0 | 3.52e-01 | 91.6% | 72.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2048169 | 3644.1.1.3 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Tospo_nucleocap | 0.97 | 95.0 | 8.37e-01 | 100.0% | 73.9% |
| 3376246 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.57 | 37.0 | 3.42e-01 | 84.7% | 50.6% |
| 3611674 | 109.4.1.1276 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR | 0.57 | 38.0 | 3.86e-01 | 91.1% | 66.2% |
| 4026902 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.55 | 36.0 | 4.03e-01 | 86.3% | 86.2% |
| 3515022 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.53 | 35.0 | 3.62e-01 | 82.1% | 68.3% |
| 4977051 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 32.0 | 3.17e-01 | 81.1% | 56.0% |
| 3711475 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 45.0 | 3.96e-01 | 94.7% | 81.1% |
| 3424083 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.51 | 30.0 | 3.43e-01 | 81.1% | 77.1% |
| 3673231 | 109.4.1.493 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2 | 0.50 | 39.0 | 3.92e-01 | 84.2% | 77.5% |
| 3595800 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 40.0 | 3.83e-01 | 94.2% | 70.0% |
| 3995365 | 109.4.1.953 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_1st | 0.50 | 42.0 | 3.76e-01 | 94.7% | 63.8% |
| 3739069 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 34.0 | 3.58e-01 | 90.0% | 76.4% |