nucleocapsid_protein

Euk-Vir

Datura_yellow_vein_nucleorhabdovirus

nucleocapsid_protein__YP_009176972__Datura_yellow_vein_nucleorhabdovirus__195059

Identity

72.2 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Betanucleorhabdovirus› Datura_yellow_vein_nucleorhabdovirus

TaxID: 195059

View cluster (144 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-128_152-256

PDB

Domain cluster: rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xevB00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.62	30.0	3.67e-01	94.4%	69.4%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.59	28.0	3.80e-01	76.9%	88.3%
3gs3A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.55	38.0	3.51e-01	95.4%	54.6%
2jqqA00	1.20.58.1240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	36.0	3.97e-01	93.3%	83.1%
1dlcA01	1.20.190.10	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain	0.51	36.0	3.46e-01	70.8%	99.1%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3507992	566.1.1.0 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related	0.57	50.0	4.25e-01	95.4%	59.1%
1815422	566.1.1.3 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap	0.56	50.0	4.84e-01	96.9%	99.5%
3636793	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	35.0	3.32e-01	97.9%	54.0%
3415904	592.1.1.0 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain	0.51	27.0	3.56e-01	77.4%	100.0%

D2 high residues 263-396

PDB

Domain cluster: rep: nucleocapsid__YP_009289348__Sanxia_Water_Strider_Virus_5__1608064__D276-411

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03216.19 best	Rhabdo_ncap_2	44.6	1.80e-11	64.9%	29.5%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.69	65.0	5.64e-01	100.0%	73.8%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.69	63.0	5.57e-01	99.3%	73.7%
2prrA02	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.59	44.0	4.52e-01	99.3%	81.1%
1ka1A01	3.30.540.10	Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1	0.56	39.0	3.28e-01	94.0%	42.9%
1c9bA02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.55	37.0	4.08e-01	97.8%	86.8%
1zp2A01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.54	36.0	3.88e-01	100.0%	78.3%
1aisB01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.53	35.0	3.98e-01	98.5%	90.9%
1c9bA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.53	35.0	4.01e-01	96.3%	92.8%
2f2cA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.52	35.0	3.82e-01	94.0%	84.4%
2hyjA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	29.0	2.83e-01	72.4%	46.9%
2yxoB00	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.50	41.0	3.35e-01	89.6%	95.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3942592	608.1.1.1 ↗	alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD	0.60	45.0	4.53e-01	99.3%	76.8%
3736572	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.57	40.0	4.07e-01	100.0%	71.9%
5042605	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.57	37.0	4.26e-01	99.3%	93.5%
5000678	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.56	36.0	4.07e-01	96.3%	87.0%
4962267	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.53	33.0	3.81e-01	93.3%	91.1%
3711833	7015.1.1.0 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain	0.50	34.0	3.18e-01	88.1%	54.5%