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nucleocapsid_protein
Euk-VirTofla_virus
nucleocapsid_protein__YP_009227120__Tofla_virus__1615758
Identity
- Accession:
- YP_009227120 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
78.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Nairoviridae›
Orthonairovirus›
Tofla_virus
TaxID: 1615758
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 198-302
Domain cluster:
rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 114.6 | 7.80e-33 | 100.0% | 23.7% |
D2
medium
residues 80-171
Domain cluster:
rep: nucleoprotein__YP_009551659__Great_Saltee_virus__1810946__D96-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 114.8 | 6.50e-33 | 100.0% | 20.3% |
D3
medium
residues 172-188_402-485
Domain cluster:
rep: nucleoprotein__YP_009513193__Thiafora_orthonairovirus__1980529__D158-181_403-459
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 46.7 | 3.00e-12 | 44.5% | 9.7% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 43.0 | 3.33e-01 | 78.2% | 62.2% |
| 4ezbA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 39.0 | 3.74e-01 | 70.3% | 63.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3998164 | 109.4.1.759 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dymeclin | 0.57 | 44.0 | 3.21e-01 | 83.2% | 72.8% |
| 4635289 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 40.0 | 2.71e-01 | 74.3% | 21.7% |
D4
medium
residues 306-401
Domain cluster:
rep: nucleocapsid_protein,_partial__YP_009666114__Chim_orthonairovirus__2170062__D314-412
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02477.21 best | Nairo_nucleo | 174.6 | 4.70e-51 | 100.0% | 21.4% |