←Back to structures
nucleocapsid_protein
Euk-VirShuangao_Insect_Virus_1
nucleocapsid_protein__YP_009300683__Shuangao_Insect_Virus_1__1608075
Identity
- Accession:
- YP_009300683 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
66.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Peribunyaviridae›
Shangavirus›
Shuangao_Insect_Virus_1
TaxID: 1608075
Cluster
View cluster (71 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-148
Domain cluster:
rep: nucleoprotein__YP_010086207__Caimito_virus__2572766__D12-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00952.24 best | Bunya_nucleocap | 31.2 | 2.50e-07 | 96.6% | 50.4% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iduB01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.90 | 77.0 | 7.52e-01 | 89.7% | 88.2% |
| 3zlaD01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.89 | 77.0 | 7.50e-01 | 89.7% | 88.9% |
| 4bgpA01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.88 | 75.0 | 7.31e-01 | 89.7% | 89.0% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.63 | 47.0 | 3.57e-01 | 77.8% | 68.4% |
| 1kqfA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 48.0 | 3.82e-01 | 94.9% | 90.8% |
| 2cufA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 34.0 | 4.12e-01 | 92.3% | 98.6% |
| 4i92A02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 42.0 | 3.67e-01 | 84.6% | 82.9% |
| 1rh5A00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.53 | 46.0 | 3.25e-01 | 99.1% | 89.5% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.52 | 21.0 | 2.80e-01 | 81.2% | 65.5% |
| 6mcjA00 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.51 | 37.0 | 3.47e-01 | 91.5% | 60.7% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 42.0 | 3.18e-01 | 100.0% | 35.5% |
| 1qhdA02 | 1.10.1350.10 | Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain | 0.51 | 39.0 | 3.21e-01 | 82.9% | 95.2% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.50 | 26.0 | 2.84e-01 | 82.9% | 57.3% |
| 3p5pA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 42.0 | 3.14e-01 | 100.0% | 35.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1014397 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.86 | 82.0 | 6.50e-01 | 100.0% | 57.4% |
| 224425 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.86 | 81.0 | 6.29e-01 | 100.0% | 52.1% |
| 3219380 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.67 | 15.0 | 2.80e-01 | 78.6% | 52.6% |
| 3491256 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 37.0 | 3.22e-01 | 74.4% | 85.7% |
D2
high
residues 162-264