nucleocapsid_protein

Euk-Vir

Wenzhou_Tick_Virus

nucleocapsid_protein__YP_009304991__Wenzhou_Tick_Virus__1608094

Identity

77.5 mean pLDDT

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Wenzhou_Tick_Virus

TaxID: 1608094

View cluster (24 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 196-296

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009293589__Huangpi_Tick_Virus_1__1608047__D193-288

D2 medium residues 79-162

PDB

Domain cluster: rep: nucleoprotein__YP_009551659__Great_Saltee_virus__1810946__D96-157

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	79.4	3.70e-22	100.0%	18.7%

D3 medium residues 163-190_310-440

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	115.0	5.90e-33	84.9%	29.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4890819	3574.1.1.1 ↗	alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo	0.92	89.0	6.08e-01	100.0%	58.0%
1723600	3574.1.1.1 ↗	alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo	0.87	84.0	5.74e-01	100.0%	56.4%
1007268	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.61	48.0	4.11e-01	82.4%	64.9%
4932527	314.1.1.9 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His	0.51	46.0	3.59e-01	100.0%	90.6%