←Back to structures

nucleocapsid_protein

Euk-Vir

Wuhan_mosquito_virus_1

nucleocapsid_protein__YP_009305133__Wuhan_mosquito_virus_1__1608126

Identity

Accession:
YP_009305133 ↗
Protein ID:
nucleocapsid_protein
Kingdom:
euk

Quality

73.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Phasmaviridae› Orthophasmavirus› Wuhan_mosquito_virus_1

TaxID: 1608126

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 64-163
PDB
Domain cluster: rep: nucleocapsid_protein__YP_009553312__Yongsan_bunyavirus_1__2315803__D65-226
D2 medium residues 254-309
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lujB01 1.10.10.490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT 0.69 47.0 4.83e-01 100.0% 75.5%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.73e-01 96.4% 74.6%
2xvcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.62e-01 96.4% 80.4%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.62 53.0 4.18e-01 98.2% 85.1%
2vklA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.60 51.0 4.68e-01 100.0% 72.7%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.91e-01 100.0% 46.7%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.57 46.0 3.30e-01 91.1% 48.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 41.0 3.64e-01 78.6% 59.5%
3cm0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 3.01e-01 87.5% 79.3%
3dktA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.54 41.0 3.52e-01 83.9% 56.8%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.54 44.0 3.77e-01 100.0% 72.1%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.59e-01 98.2% 48.0%
1ig3A02 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.53 40.0 3.12e-01 89.3% 37.4%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.53 44.0 3.95e-01 100.0% 65.9%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 39.0 3.84e-01 96.4% 85.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4484053 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.71 49.0 4.38e-01 100.0% 53.3%
3250375 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.71 42.0 3.81e-01 96.4% 44.0%
3844040 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.67 41.0 3.95e-01 94.6% 53.8%
3823610 101.1.10.36 ↗ alpha arrays › HTH › HTH › Cyclin-like › MOM1 0.65 53.0 4.22e-01 94.6% 49.2%
5026124 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.64 49.0 4.77e-01 89.3% 83.1%
3682040 101.1.10.36 ↗ alpha arrays › HTH › HTH › Cyclin-like › MOM1 0.64 53.0 4.09e-01 96.4% 43.7%
3976108 101.1.2.491 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_BREX_BrxC 0.63 52.0 4.15e-01 98.2% 68.8%
3335062 101.1.10.36 ↗ alpha arrays › HTH › HTH › Cyclin-like › MOM1 0.62 52.0 4.12e-01 98.2% 76.8%
5011354 316.1.1.39 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 0.62 47.0 3.32e-01 87.5% 25.4%
3460858 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.61 46.0 3.60e-01 98.2% 39.1%
3255275 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 51.0 5.05e-01 94.6% 88.3%
5040578 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.60 47.0 4.48e-01 100.0% 72.3%
3584992 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 48.0 3.39e-01 100.0% 46.2%
3883328 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 42.0 3.58e-01 98.2% 45.3%
4024538 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.58 41.0 2.96e-01 98.2% 23.2%
3234731 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.57 46.0 4.50e-01 94.6% 83.1%
5011499 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.54e-01 100.0% 81.5%
3358626 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 44.0 4.29e-01 89.3% 84.6%
5053497 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.43e-01 89.3% 86.7%
3831817 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.56 43.0 3.13e-01 83.9% 30.0%
3352389 101.1.10.58 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF30926 0.56 45.0 4.56e-01 100.0% 98.2%
3490008 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.10e-01 98.2% 83.1%
4387678 109.49.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central 0.54 44.0 2.97e-01 100.0% 67.6%
3663500 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.53 44.0 3.21e-01 96.4% 34.5%
1551399 4982.2.1.1 ↗ alpha arrays › KaiA/RbsU domain-like › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mitochondrial 54S ribosomal protein L8 C-terminal domain › Mrpl_C 0.53 44.0 3.73e-01 100.0% 54.9%
3335541 109.4.1.2173 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif 0.53 40.0 2.59e-01 92.9% 14.5%
3943035 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.52 43.0 4.20e-01 100.0% 87.7%
3808273 109.4.1.1266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB 0.52 40.0 2.43e-01 100.0% 12.2%
3173200 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.51 43.0 3.55e-01 100.0% 54.5%