nucleocapsid_protein

Euk-Vir

Jeju_virus

nucleocapsid_protein__YP_009361844__Jeju_virus__990280

Identity

84.0 mean pLDDT

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Hantaviridae› Orthohantavirus› Jeju_virus

TaxID: 990280

View cluster (28 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009362056__Cao_Bang_orthohantavirus__1980464__D1-71

D2 medium residues 113-215

PDB

Domain cluster: rep: hypothetical_protein__NP_941977__Hantaan_orthohantavirus__1980471__D78-200

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00846.25 best	Hanta_nucleocap	151.9	3.70e-44	100.0%	24.1%

D3 medium residues 216-309

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00846.25 best	Hanta_nucleocap	95.8	4.00e-27	100.0%	21.6%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5xfaA04	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.53	26.0	2.70e-01	73.4%	49.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3207735	7513.1.1.1 ↗	a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD	0.56	35.0	2.34e-01	76.6%	16.8%
3722758	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.50	40.0	2.67e-01	90.4%	73.4%

D4 medium residues 310-423

PDB

Domain cluster: rep: nucleocapsid_protein__YP_001911121__Thottopalayam_virus__1980493__D301-430

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00846.25 best	Hanta_nucleocap	222.7	1.20e-65	100.0%	26.7%