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nucleocapsid_protein
Euk-VirColocasia_bobone_disease-associated_virus
nucleocapsid_protein__YP_009362275__Colocasia_bobone_disease-associated_virus__1775456
Identity
- Accession:
- YP_009362275 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
72.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Betacytorhabdovirus›
Colocasia_bobone_disease-associated_virus
TaxID: 1775456
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-16_251-382
Domain cluster:
rep: nucleocapsid_protein__YP_010087150__Cytorhabdovirus_caricae__2364291__D277-416_434-447
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 64.1 | 1.90e-17 | 66.7% | 31.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.75 | 66.0 | 5.88e-01 | 93.6% | 74.9% |
| 2gttJ02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.72 | 64.0 | 5.71e-01 | 93.6% | 74.7% |
| 1n93X02 | 1.10.3050.10 | Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 2 › borna disease virus nucleoprotein, domain 2 | 0.63 | 46.0 | 4.78e-01 | 93.6% | 82.7% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 41.0 | 4.35e-01 | 98.6% | 84.8% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 40.0 | 4.24e-01 | 98.6% | 83.5% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.51 | 37.0 | 3.73e-01 | 92.9% | 75.4% |
| 1e7pC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.51 | 36.0 | 3.01e-01 | 73.0% | 71.3% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.50 | 29.0 | 3.12e-01 | 73.8% | 65.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047096 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.53 | 44.0 | 3.90e-01 | 90.8% | 88.8% |
| 3939088 | 5001.1.1.31 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GPR180-TMEM145_TM | 0.51 | 37.0 | 2.96e-01 | 73.0% | 86.3% |
D2
high
residues 33-114_143-248
Domain cluster:
rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 39.3 | 7.00e-10 | 100.0% | 51.9% |