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nucleocapsid_protein

Euk-Vir

Kabuto_mountain_virus

nucleocapsid_protein__YP_009449452__Kabuto_mountain_virus__1851087

Identity

Accession:: YP_009449452 ↗
Protein ID:: nucleocapsid_protein
Kingdom:: euk

Quality

83.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Uukuvirus› Kabuto_mountain_virus

TaxID: 1851087

Cluster

View cluster (83 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-128

PDB

Domain cluster: rep: putative_nucleoprotein__YP_009330282__Hubei_diptera_virus_5__1922886__D214-314

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05733.17 best	Tenui_N	62.9	4.70e-17	98.9%	38.4%

D2 high residues 145-254

PDB

Domain cluster: rep: nucleocapsid_protein__YP_010086239__Norway_phlebovirus_1__2034330__D328-441

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05733.17 best	Tenui_N	47.8	2.00e-12	74.6%	36.2%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qqaA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.67	33.0	4.41e-01	83.6%	88.1%
7dl9B02	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.65	46.0	3.80e-01	73.6%	90.6%
2ib0A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.58	44.0	4.13e-01	79.1%	88.9%
1x42A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.57	33.0	3.82e-01	87.3%	77.1%
2ibdA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	41.0	3.76e-01	99.1%	56.5%
4im7A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.55	43.0	3.55e-01	84.5%	93.3%
2qsbA00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.55	31.0	3.47e-01	98.2%	70.6%
1hqvA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.54	41.0	3.56e-01	80.9%	75.3%
3m6jA01	1.20.1260.40	Mainly Alpha › Up-down Bundle › Ferritin ›	0.54	40.0	3.99e-01	78.2%	91.5%
7um4A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.54	42.0	3.34e-01	85.5%	71.7%
3ecsC01	1.20.120.1070	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain	0.53	36.0	3.77e-01	96.4%	76.0%
3h2zA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.53	45.0	3.89e-01	94.5%	64.8%
8h6rA01	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.53	32.0	3.49e-01	91.8%	75.3%
1wu3I00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.51	40.0	3.57e-01	97.3%	58.4%
6wb9201	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	39.0	2.88e-01	100.0%	31.5%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1007268	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.91	81.0	6.03e-01	93.6%	41.9%
1030601	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.89	82.0	6.04e-01	98.2%	42.2%
3820015	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.84	73.0	5.42e-01	93.6%	39.1%
3264612	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.57	41.0	3.52e-01	74.5%	87.2%
4645242	191.1.1.26 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24	0.57	41.0	3.76e-01	99.1%	57.2%
3309308	611.3.1.1 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26	0.56	34.0	3.47e-01	94.5%	61.0%
4951672	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.56	43.0	3.69e-01	83.6%	95.7%
5057140	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	31.0	4.03e-01	84.5%	100.0%
3958811	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	38.0	3.62e-01	98.2%	60.0%
4121471	3236.1.1.12 ↗	alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Cons_hypoth698	0.54	43.0	3.17e-01	86.4%	85.4%
4971089	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.54	48.0	4.17e-01	96.4%	86.7%
3741875	3277.2.1.1 ↗	alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C	0.53	38.0	4.12e-01	95.5%	87.1%
5009863	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.53	43.0	4.37e-01	87.3%	95.4%
3402962	101.1.21.1 ↗	alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N	0.52	41.0	3.17e-01	87.3%	90.5%
3980481	5050.1.1.7 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nuc_H_symport	0.51	45.0	3.62e-01	98.2%	90.7%
4393414	1002.1.1.1 ↗	alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB	0.51	36.0	3.56e-01	100.0%	66.1%
3285087	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.51	43.0	4.12e-01	93.6%	94.6%
3306013	5050.1.1.11 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93	0.51	43.0	3.52e-01	93.6%	90.7%
3989298	601.19.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein	0.51	35.0	3.13e-01	71.8%	69.7%
3936050	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.50	40.0	3.33e-01	87.3%	98.5%