nucleocapsid_protein

Euk-Vir

Drosophila_immigrans_sigmavirus

nucleocapsid_protein__YP_009505492__Drosophila_immigrans_sigmavirus__1002360

Identity

77.1 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Sigmavirus› Drosophila_immigrans_sigmavirus

TaxID: 1002360

View cluster (34 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-245

PDB

Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	74.1	1.50e-20	96.0%	40.5%

D2 medium residues 249-320_361-374

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.89	84.0	6.22e-01	100.0%	62.6%
2r6aC01	1.10.860.10	Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A	0.58	42.0	4.13e-01	79.1%	96.9%

D3 medium residues 321-360_408-464

PDB

Domain cluster: rep: nucleoprotein__YP_010229208__Almendravirus_cootbay__1972685__D274-348_379-429

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.93	86.0	6.61e-01	96.9%	64.1%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.83	76.0	5.93e-01	96.9%	63.2%
4z7xB00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.54	38.0	3.03e-01	74.2%	73.6%
1owlA02	1.25.40.80	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	37.0	3.51e-01	88.7%	57.7%
2vixA03	1.20.1280.240	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.52	35.0	3.37e-01	90.7%	59.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.92	86.0	5.45e-01	97.9%	28.5%
3863049	4193.1.1.1 ↗	alpha arrays › RUN domain › RUN domain › RUN domain › RUN	0.58	42.0	3.47e-01	76.3%	86.1%
3498452	109.4.1.129 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Leuk-A4-hydro_C	0.54	42.0	3.65e-01	97.9%	54.7%
4369617	633.8.1.3 ↗	alpha bundles › Bromodomain-like › MAST3 pre-PK domain-like › MAST3 pre-PK domain-like › FUSC	0.50	37.0	3.19e-01	95.9%	49.3%
3278196	191.1.1.8 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_33	0.50	38.0	3.24e-01	84.5%	83.9%