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nucleocapsid_protein
Euk-VirLoei_River_mammarenavirus
nucleocapsid_protein__YP_009505804__Loei_River_mammarenavirus__1437126
Identity
- Accession:
- YP_009505804 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
77.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_loeiense
TaxID: 1437126
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 369-561
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17290.9 best | Arena_ncap_C | 318.3 | 1.50e-95 | 91.7% | 97.8% |
D2
medium
residues 20-79_173-272
Domain cluster:
rep: nucleoprotein__YP_006858707__Lunk_virus_NKS-1__1134579__D27-82_171-257
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 180.1 | 7.80e-53 | 64.4% | 30.5% |
| PF00843.23 | Arena_nucleocap | 85.6 | 4.60e-24 | 38.1% | 17.7% |
D3
medium
residues 273-342
Domain cluster:
rep: N_protein__YP_138544__Pichinde_virus__2905917__D268-311_324-337
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 117.6 | 8.20e-34 | 92.9% | 18.9% |