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nucleocapsid_protein
Euk-VirCacao_swollen_shoot_Togo_A_virus
nucleocapsid_protein__YP_009506253__Cacao_swollen_shoot_Togo_A_virus__1960254
Identity
- Accession:
- YP_009506253 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
70.7
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Caulimoviridae›
Badnavirus›
Cacao_swollen_shoot_Togo_A_virus
TaxID: 1960254
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-24_265-429
Domain cluster:
rep: nucleocapsid_protein__YP_010087150__Cytorhabdovirus_caricae__2364291__D277-416_434-447
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 69.0 | 6.40e-19 | 50.9% | 30.9% |
D2
high
residues 36-263
Domain cluster:
rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 44.9 | 1.40e-11 | 98.7% | 62.9% |