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nucleocapsid_protein

Euk-Vir

Hazara_virus

nucleocapsid_protein__YP_009507852__Hazara_virus__11596

Identity

Accession:: YP_009507852 ↗
Protein ID:: nucleocapsid_protein
Kingdom:: euk

Quality

76.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Hazara_virus

TaxID: 11596

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 198-300

PDB

Domain cluster: rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	118.8	4.00e-34	100.0%	23.0%

D2 medium residues 32-85

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	69.2	4.60e-19	100.0%	11.7%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e98B00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.74	51.0	3.53e-01	72.2%	66.7%
1mhyG02	1.20.1280.30	Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2	0.73	50.0	4.54e-01	70.4%	63.0%
3geeA02	1.20.120.430	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2	0.72	55.0	3.90e-01	83.3%	90.5%
3kkbA00	1.20.120.880	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain	0.72	49.0	3.73e-01	70.4%	34.9%
4etrB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.71	50.0	3.90e-01	75.9%	72.1%
2rbdA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.68	52.0	3.74e-01	79.6%	39.3%
4gw9A01	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.60	51.0	3.35e-01	92.6%	75.8%
2oh3A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.59	43.0	3.25e-01	79.6%	72.2%
1sg2A00	3.30.910.20	Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain	0.58	43.0	3.37e-01	87.0%	63.8%
1ra6A03	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.56	43.0	3.84e-01	92.6%	90.8%
1ybeB01	3.20.140.10	Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase	0.55	40.0	2.48e-01	83.3%	59.6%
2jfrA00	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.54	42.0	2.81e-01	85.2%	20.1%
4lqxA00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.53	41.0	2.74e-01	98.1%	65.7%
1m56C01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	38.0	3.61e-01	83.3%	82.6%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1681656	3574.1.1.1 ↗	alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo	0.98	94.0	6.20e-01	100.0%	30.2%
1723600	3574.1.1.1 ↗	alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo	0.94	88.0	4.98e-01	100.0%	11.3%
3808441	4095.1.1.1 ↗	alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N	0.79	56.0	4.10e-01	75.9%	29.7%
3187164	109.4.1.954 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EF3_N	0.78	55.0	3.47e-01	74.1%	16.5%
4965632	192.7.1.85 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › DUF4349	0.76	52.0	4.89e-01	70.4%	69.2%
3733140	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.76	56.0	3.98e-01	77.8%	32.9%
5048061	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.74	52.0	5.23e-01	74.1%	87.3%
3289740	605.1.1.4 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3	0.74	50.0	4.91e-01	72.2%	98.3%
3697355	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.73	56.0	3.99e-01	79.6%	61.9%
4221982	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.73	50.0	4.03e-01	70.4%	44.0%
4363487	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.72	49.0	4.02e-01	70.4%	44.0%
5003155	223.1.1.25 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9	0.72	51.0	3.49e-01	74.1%	26.5%
1822527	101.1.2.135 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR_2	0.72	51.0	3.66e-01	72.2%	32.2%
4964878	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.69	49.0	4.56e-01	75.9%	70.0%
4345287	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.68	46.0	3.81e-01	70.4%	44.0%
3215342	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.67	46.0	3.85e-01	72.2%	49.5%
4095475	377.1.1.2 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14	0.65	45.0	3.73e-01	70.4%	44.2%
3619917	1134.1.1.0 ↗	alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain	0.65	44.0	4.54e-01	70.4%	78.0%
3364309	220.1.1.76 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2	0.64	44.0	3.41e-01	74.1%	40.8%

D3 medium residues 86-143_307-397

PDB

Domain cluster: rep: nucleoprotein__NP_950237__Crimean-Congo_hemorrhagic_fever_orthonairovirus__1980519__D84-138_302-383

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	162.0	3.10e-47	62.4%	20.3%
PF02477.21	Nairo_nucleo	64.0	1.70e-17	39.6%	12.6%

D4 medium residues 155-187_398-485

PDB

Domain cluster: rep: nucleocapside__YP_009111286__Leopards_Hill_virus__1381104__D44-75_156-179_418-493

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	61.2	1.20e-16	41.3%	11.1%
PF02477.21	Nairo_nucleo	37.4	2.00e-09	28.1%	7.0%