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nucleocapsid_protein
Euk-VirActinidia_chlorotic_ringspot-associated_virus
nucleocapsid_protein__YP_009507928__Actinidia_chlorotic_ringspot-associated_virus__1776763
Identity
- Accession:
- YP_009507928 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
71.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Fimoviridae›
Emaravirus›
Actinidia_chlorotic_ringspot-associated_virus
TaxID: 1776763
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-56_75-151
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25629.2 best | Fimo_NCAP | 87.8 | 1.10e-24 | 100.0% | 36.8% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4569662 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.58 | 40.0 | 2.86e-01 | 70.4% | 81.0% |
| 10703 | 7574.1.1.2 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh | 0.51 | 40.0 | 2.82e-01 | 84.3% | 82.9% |
D2
high
residues 156-305
Domain cluster:
rep: putative_nucleocapsid_protein__YP_010088067__Emaravirus_cordylinae__2099567__D171-282
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25629.2 best | Fimo_NCAP | 204.3 | 3.30e-60 | 98.0% | 55.3% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 30.0 | 3.74e-01 | 73.3% | 74.5% |
| 2xrhA00 | 1.20.120.1430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle | 0.58 | 36.0 | 4.26e-01 | 85.3% | 93.0% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 24.0 | 2.82e-01 | 70.7% | 51.4% |
| 2p0nA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.50 | 33.0 | 3.26e-01 | 88.0% | 61.5% |