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nucleocapsid_protein
Euk-VirTete_orthobunyavirus
nucleocapsid_protein__YP_009512924__Tete_orthobunyavirus__35319
Identity
- Accession:
- YP_009512924 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
75.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Peribunyaviridae›
Orthobunyavirus›
Orthobunyavirus_teteense
TaxID: 35319
Cluster
View cluster (71 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-232
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00952.24 best | Bunya_nucleocap | 236.5 | 4.10e-70 | 100.0% | 83.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3feyA02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 40.0 | 4.04e-01 | 93.2% | 77.1% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 26.0 | 3.43e-01 | 72.8% | 86.2% |
| 3myvA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 39.0 | 3.67e-01 | 80.6% | 95.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 224425 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.95 | 93.0 | 8.51e-01 | 100.0% | 81.6% |
| 1014397 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.94 | 91.0 | 8.70e-01 | 100.0% | 88.9% |
| 2048169 | 3644.1.1.3 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Tospo_nucleocap | 0.74 | 68.0 | 6.11e-01 | 100.0% | 73.2% |
| 5026994 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 28.0 | 3.37e-01 | 77.5% | 62.3% |
| 3453088 | 109.4.1.244 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN6_N | 0.52 | 36.0 | 2.99e-01 | 93.7% | 39.7% |