nucleocapsid_protein

Euk-Vir

Avian_metaavulavirus_6

nucleocapsid_protein__YP_009512944__Avian_metaavulavirus_6__2560316

Identity

77.1 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Metaavulavirus› avian_paramyxovirus_6

TaxID: 2560316

View cluster (62 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 274-401

PDB

Domain cluster: rep: nucleocapsid_protein__NP_054707__Mumps_orthorubulavirus__2560602__D281-403

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	178.5	3.10e-52	100.0%	31.8%

D2 medium residues 33-147

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009177597__Phocine_morbillivirus__11240__D32-140

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00973.26 best	Paramyxo_ncap	87.7	1.10e-24	100.0%	27.8%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1atzB00	3.40.50.410	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain	0.58	49.0	4.16e-01	91.3%	93.1%
6kd0A01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.58	48.0	3.46e-01	88.7%	73.1%
2ac2A01	3.40.50.1400	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.57	46.0	4.14e-01	89.6%	94.0%
1lbqB01	3.40.50.1400	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	46.0	3.81e-01	89.6%	81.4%
1rttA00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.56	46.0	4.04e-01	90.4%	94.8%
3lcnB00	1.10.340.40	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain	0.54	40.0	4.28e-01	78.3%	94.8%
4kv7A01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.53	45.0	3.81e-01	98.3%	67.5%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2996711	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.92	88.0	5.81e-01	100.0%	28.5%
2521251	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.91	85.0	5.66e-01	100.0%	28.9%
2749214	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.82	76.0	5.09e-01	100.0%	29.4%
2756727	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.81	76.0	5.09e-01	100.0%	45.4%
3573542	566.1.1.0 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related	0.61	54.0	3.85e-01	95.7%	41.5%
4153160	2007.1.14.3 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase	0.61	47.0	4.08e-01	80.9%	92.9%
3370304	632.15.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1	0.54	39.0	4.12e-01	91.3%	82.9%
3506334	1137.2.1.1 ↗	a+b two layers › Tetrapyrrole methylase C-terminal domain-like › GckA/TtuD-like domain 2 › GckA/TtuD-like domain 2 › MOFRL	0.51	37.0	2.99e-01	75.7%	93.1%