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nucleocapsid_protein
Euk-VirAvian_orthoavulavirus_1
nucleocapsid_protein__YP_009513194__Avian_orthoavulavirus_1__2560319
Identity
- Accession:
- YP_009513194 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
74.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Paramyxoviridae›
Orthoavulavirus›
avian_paramyxovirus_1
TaxID: 2560319
Cluster
View cluster (62 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-240
Domain cluster:
rep: hypothetical_protein_1__YP_009342281__Wuchang_romanomermis_nematode_virus_2__2773460__D34-230
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00973.26 best | Paramyxo_ncap | 197.5 | 4.90e-58 | 100.0% | 51.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gttC01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.64 | 52.0 | 5.37e-01 | 99.5% | 90.7% |
| 3hhwK01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.63 | 49.0 | 5.19e-01 | 99.5% | 91.3% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.55 | 24.0 | 3.19e-01 | 88.0% | 74.1% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.55 | 30.0 | 3.35e-01 | 83.7% | 65.0% |
| 4f55A01 | 1.10.10.2520 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 | 0.52 | 20.0 | 3.14e-01 | 84.6% | 88.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2996711 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.96 | 94.0 | 7.20e-01 | 100.0% | 52.1% |
| 2521251 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.95 | 92.0 | 7.17e-01 | 100.0% | 53.2% |
| 2769765 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.93 | 90.0 | 6.99e-01 | 100.0% | 52.7% |
| 2756727 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.90 | 87.0 | 6.80e-01 | 100.0% | 53.3% |
| 2749214 | 566.1.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap | 0.87 | 85.0 | 6.65e-01 | 100.0% | 54.8% |
| 3507992 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.64 | 60.0 | 5.14e-01 | 100.0% | 74.8% |
| 3962081 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.63 | 26.0 | 3.12e-01 | 89.9% | 54.3% |
| 3596023 | 4002.1.1.0 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes | 0.52 | 37.0 | 3.70e-01 | 95.7% | 69.4% |
D2
medium
residues 280-398
Domain cluster:
rep: nucleocapsid_protein__NP_054707__Mumps_orthorubulavirus__2560602__D281-403
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00973.26 best | Paramyxo_ncap | 150.1 | 1.30e-43 | 100.0% | 29.0% |