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nucleocapsid_protein
Euk-VirLihan_tick_virus
nucleocapsid_protein__YP_010086228__Lihan_tick_virus__1608056
Identity
- Accession:
- YP_010086228 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
66.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Phenuiviridae›
Uukuvirus›
Lihan_tick_virus
TaxID: 1608056
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 197-244
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w00A05 | 1.20.58.2040 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 3.46e-01 | 77.1% | 41.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3419116 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.54 | 36.0 | 3.43e-01 | 70.8% | 100.0% |
| 4027470 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.53 | 38.0 | 3.04e-01 | 75.0% | 37.9% |
D2
medium
residues 346-477
Domain cluster:
rep: nucleocapsid_protein__YP_010086239__Norway_phlebovirus_1__2034330__D328-441
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05733.17 best | Tenui_N | 29.1 | 1.10e-06 | 68.9% | 37.5% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 28.0 | 3.44e-01 | 70.5% | 67.4% |
| 5y6iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 32.0 | 4.19e-01 | 76.5% | 100.0% |
| 7ys6A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 38.0 | 3.08e-01 | 72.0% | 68.2% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 33.0 | 3.60e-01 | 83.3% | 73.4% |
| 2a61B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 34.0 | 3.40e-01 | 84.8% | 60.6% |
| 1r1tA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 4.14e-01 | 97.7% | 93.9% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 4.15e-01 | 99.2% | 97.8% |
| 2jscB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 32.0 | 3.99e-01 | 85.6% | 100.0% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 4.08e-01 | 96.2% | 94.9% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 34.0 | 4.01e-01 | 93.9% | 97.8% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 33.0 | 4.00e-01 | 84.1% | 100.0% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 27.0 | 3.28e-01 | 99.2% | 77.6% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.95e-01 | 87.9% | 97.8% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 28.0 | 3.67e-01 | 74.2% | 98.6% |
| 7txnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.98e-01 | 89.4% | 100.0% |
| 6lcuA02 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.50 | 31.0 | 3.41e-01 | 95.5% | 76.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1030601 | 3143.1.2.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N | 0.92 | 85.0 | 6.63e-01 | 97.0% | 50.2% |
| 1007268 | 3143.1.2.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N | 0.92 | 82.0 | 6.43e-01 | 94.7% | 49.2% |
| 3237702 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 37.0 | 4.47e-01 | 87.9% | 94.1% |
| 3822341 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.57 | 36.0 | 4.31e-01 | 89.4% | 97.6% |
| 3941508 | 148.1.3.57 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF5375 | 0.56 | 32.0 | 3.71e-01 | 73.5% | 77.9% |
| 4287688 | 101.1.2.46 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg | 0.55 | 38.0 | 4.34e-01 | 93.9% | 96.8% |
| 4364450 | 101.1.2.46 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg | 0.55 | 38.0 | 3.75e-01 | 93.2% | 67.1% |
| 4930903 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.55 | 35.0 | 4.20e-01 | 94.7% | 100.0% |
| 3348850 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 31.0 | 3.93e-01 | 75.8% | 93.8% |
| 4957083 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 35.0 | 4.15e-01 | 90.2% | 97.8% |
| 5073681 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 34.0 | 3.62e-01 | 95.5% | 73.9% |
| 4372770 | 101.1.2.46 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg | 0.52 | 34.0 | 3.93e-01 | 83.3% | 91.6% |
| 326087 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.52 | 31.0 | 3.09e-01 | 81.8% | 53.8% |
| 5018358 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.52 | 36.0 | 3.99e-01 | 94.7% | 88.6% |
| 3998495 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 26.0 | 3.51e-01 | 72.7% | 91.4% |
| 4107841 | 101.1.2.46 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg | 0.52 | 33.0 | 3.84e-01 | 81.8% | 92.2% |
| 3616226 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.52 | 30.0 | 3.17e-01 | 78.0% | 60.8% |
| 5023102 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.52 | 31.0 | 3.40e-01 | 84.1% | 70.9% |
| 3816427 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 39.0 | 4.31e-01 | 89.4% | 100.0% |
| 3283013 | 3576.1.1.1 ↗ | a+b complex topology › Cas8-like › Cascade subunit CasA/Cse1/Cas8 › Cascade subunit CasA/Cse1/Cas8 › CRISPR_Cse1 | 0.51 | 37.0 | 2.56e-01 | 77.3% | 38.1% |
| 4679870 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 3.94e-01 | 97.0% | 95.8% |
| 3450793 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 36.0 | 3.55e-01 | 72.0% | 85.0% |