←Back to structures
nucleocapsid_protein
Euk-VirTacheng_Tick_Virus_2
nucleocapsid_protein__YP_010086230__Tacheng_Tick_Virus_2__1608084
Identity
- Accession:
- YP_010086230 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
68.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Phenuiviridae›
Uukuvirus›
Tacheng_Tick_Virus_2
TaxID: 1608084
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 137-191
D2
medium
residues 192-320
Domain cluster:
rep: putative_nucleoprotein__YP_009330282__Hubei_diptera_virus_5__1922886__D214-314
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05733.17 best | Tenui_N | 87.5 | 1.40e-24 | 99.2% | 53.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bwiB01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 37.0 | 3.29e-01 | 77.5% | 93.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1007268 | 3143.1.2.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N | 0.94 | 78.0 | 6.05e-01 | 90.7% | 44.4% |
| 1030601 | 3143.1.2.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N | 0.87 | 83.0 | 6.44e-01 | 100.0% | 51.0% |
| 3820015 | 3143.1.2.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N | 0.83 | 71.0 | 5.51e-01 | 89.9% | 86.8% |
| 2526325 | 601.7.3.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN | 0.58 | 41.0 | 3.67e-01 | 73.6% | 64.7% |
| 3837892 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 43.0 | 3.26e-01 | 84.5% | 47.9% |
| 4030177 | 1188.1.1.1 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip | 0.53 | 40.0 | 3.27e-01 | 79.8% | 70.2% |
| 3318741 | 5059.1.1.55 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TauE | 0.52 | 36.0 | 2.70e-01 | 71.3% | 94.3% |
| 3803570 | 109.4.1.1579 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TELO2_ARM | 0.51 | 40.0 | 2.70e-01 | 84.5% | 39.8% |
| 4173843 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.51 | 32.0 | 3.39e-01 | 76.0% | 70.9% |
D3
medium
residues 321-440
Domain cluster:
rep: nucleocapsid_protein__YP_010086239__Norway_phlebovirus_1__2034330__D328-441
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05733.17 best | Tenui_N | 31.7 | 1.70e-07 | 71.7% | 34.8% |