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nucleocapsid_protein

Euk-Vir

Norway_phlebovirus_1

nucleocapsid_protein__YP_010086239__Norway_phlebovirus_1__2034330

Identity

Accession:
YP_010086239 ↗
Protein ID:
nucleocapsid_protein
Kingdom:
euk

Quality

72.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 218-314
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05733.17 best Tenui_N 43.3 4.70e-11 93.8% 36.6%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hekA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.64 48.0 4.50e-01 78.4% 71.6%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.58 36.0 3.97e-01 84.5% 80.0%
3phuA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 35.0 3.03e-01 82.5% 37.1%
2iw5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.95e-01 84.5% 67.9%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 28.0 3.39e-01 86.6% 74.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 39.0 4.12e-01 76.3% 98.8%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 3.63e-01 84.5% 85.0%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.79e-01 85.6% 79.8%
7kznP01 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.52 40.0 4.12e-01 88.7% 86.0%
4ezbA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 37.0 3.50e-01 75.3% 99.1%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.81e-01 84.5% 98.3%
2datA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 37.0 3.50e-01 78.4% 82.9%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.50 38.0 3.21e-01 80.4% 63.0%
2jokA01 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.50 37.0 3.11e-01 79.4% 56.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1007268 3143.1.2.1 alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N 0.94 81.0 5.77e-01 100.0% 35.1%
1030601 3143.1.2.1 alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N 0.91 81.0 5.78e-01 100.0% 35.9%
3820015 3143.1.2.1 alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N 0.83 78.0 5.55e-01 100.0% 38.0%
3215427 101.1.1.50 alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.57 39.0 4.40e-01 90.7% 98.6%
5076914 563.2.1.0 alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like 0.56 46.0 4.40e-01 92.8% 95.8%
3930638 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 38.0 4.02e-01 88.7% 80.0%
3329275 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 41.0 2.91e-01 78.4% 59.0%
4534098 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.54 42.0 3.55e-01 84.5% 63.4%
3655744 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 36.0 3.68e-01 75.3% 68.4%
3660526 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 37.0 2.58e-01 78.4% 52.4%
5014890 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 42.0 3.52e-01 92.8% 92.6%
2141446 109.1.1.6 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.50 39.0 3.55e-01 83.5% 94.7%
D2 high residues 328-441
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05733.17 best Tenui_N 25.4 1.40e-05 74.6% 33.9%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w53B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 42.0 3.69e-01 95.6% 42.2%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 32.0 3.65e-01 83.3% 66.7%
2yzsA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.58 43.0 3.46e-01 78.9% 61.4%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 4.31e-01 96.5% 86.3%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 4.25e-01 86.8% 100.0%
4jykA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 37.0 3.48e-01 94.7% 53.1%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.55e-01 95.6% 57.5%
4mo7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 38.0 3.53e-01 95.6% 54.9%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 32.0 3.59e-01 90.4% 74.2%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.55e-01 100.0% 96.9%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 27.0 3.31e-01 86.0% 76.1%
4n06A02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 42.0 3.23e-01 81.6% 71.6%
7ys6A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 41.0 3.20e-01 81.6% 68.9%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 4.06e-01 86.8% 100.0%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.29e-01 94.7% 54.3%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 33.0 4.04e-01 89.5% 100.0%
3kfwX01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 4.04e-01 87.7% 98.7%
7um4A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 40.0 3.20e-01 83.3% 71.3%
3b73B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.87e-01 94.7% 87.6%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 31.0 3.57e-01 90.4% 82.9%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 33.0 3.64e-01 90.4% 83.3%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 31.0 3.76e-01 86.0% 97.3%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 31.0 3.46e-01 92.1% 76.1%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 4.08e-01 98.2% 98.9%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 3.19e-01 96.5% 53.6%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 3.44e-01 100.0% 65.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1007268 3143.1.2.1 alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N 0.90 82.0 6.14e-01 100.0% 44.0%
1030601 3143.1.2.1 alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N 0.89 81.0 6.04e-01 100.0% 43.4%
5080894 101.1.2.950 alpha arrays › HTH › HTH › winged helix domain › PF29171 0.58 38.0 4.54e-01 93.9% 100.0%
4627782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 4.64e-01 97.4% 100.0%
2613 101.1.2.105 alpha arrays › HTH › HTH › winged helix domain › MotA_activ 0.57 40.0 4.31e-01 96.5% 86.3%
5036500 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.56 40.0 4.47e-01 99.1% 97.6%
5019993 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 36.0 3.90e-01 92.1% 77.9%
3899319 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 42.0 3.13e-01 80.7% 62.6%
4601008 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.55 38.0 3.88e-01 96.5% 73.6%
5019846 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.55 38.0 4.09e-01 96.5% 85.3%
5055888 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.55 34.0 4.09e-01 89.5% 96.0%
3883919 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 43.0 3.13e-01 84.2% 60.5%
3291655 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.54 38.0 4.09e-01 95.6% 86.3%
5002434 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 35.0 4.21e-01 90.4% 100.0%
5018202 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 4.01e-01 100.0% 76.5%
4966661 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.54 36.0 4.19e-01 95.6% 98.7%
5073893 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 4.04e-01 94.7% 90.6%
4941986 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.53 36.0 4.24e-01 93.0% 100.0%
4958613 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 4.02e-01 98.2% 84.0%
4945461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.85e-01 96.5% 83.2%
3281452 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.53 33.0 3.78e-01 91.2% 84.7%
4926938 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 4.12e-01 97.4% 98.8%
4927189 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 4.36e-01 99.1% 97.9%
4096065 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.52 44.0 3.21e-01 92.1% 84.7%
5054231 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 34.0 4.01e-01 87.7% 100.0%
4948727 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.52 31.0 3.82e-01 91.2% 97.1%
3282607 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.53e-01 96.5% 65.6%
4987460 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.51 35.0 4.05e-01 93.9% 100.0%
4973486 101.1.2.63 alpha arrays › HTH › HTH › winged helix domain › FaeA 0.51 32.0 3.40e-01 86.8% 70.0%
4185879 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.51 33.0 3.77e-01 90.4% 88.2%
4947296 101.1.2.905 alpha arrays › HTH › HTH › winged helix domain › DUF4443 0.51 33.0 3.94e-01 93.0% 100.0%
3621304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 4.03e-01 91.2% 98.8%
4929137 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 4.25e-01 97.4% 98.9%
4941002 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.51 36.0 4.10e-01 93.0% 100.0%
5032505 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.51 39.0 4.23e-01 96.5% 97.9%
4976799 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.93e-01 98.2% 89.5%
5045218 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 32.0 3.36e-01 87.7% 68.6%
5035853 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.51 40.0 4.30e-01 99.1% 98.0%
4982553 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.50 39.0 4.03e-01 96.5% 88.6%
4967777 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.50 36.0 4.05e-01 93.9% 100.0%