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nucleocapsid_protein

Euk-Vir

Wheat_yellow_striate_virus

nucleocapsid_protein__YP_010086812__Wheat_yellow_striate_virus__2152660

Identity

Accession:: YP_010086812 ↗
Protein ID:: nucleocapsid_protein
Kingdom:: euk

Quality

70.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphanucleorhabdovirus› Wheat_yellow_striate_virus

TaxID: 2152660

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 110-162_197-304

PDB

Domain cluster: rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03216.19 best	Rhabdo_ncap_2	47.6	2.10e-12	68.9%	33.3%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5cwkA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.63	40.0	4.04e-01	100.0%	61.3%
2i2oA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.61	43.0	3.91e-01	100.0%	54.0%
3kfwX03	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	29.0	4.02e-01	74.5%	93.4%
4d49A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.59	37.0	3.25e-01	99.4%	41.6%
4cruB00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.57	40.0	3.36e-01	100.0%	42.2%
4it4A02	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.56	31.0	3.93e-01	76.4%	93.4%
2wmoA01	1.25.40.410	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A	0.56	39.0	4.21e-01	99.4%	85.1%
2jswA00	1.20.1410.10	Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain	0.55	31.0	2.94e-01	78.3%	46.0%
4rv1F00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.53	36.0	2.67e-01	73.9%	26.5%
3o2tA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.52	42.0	3.44e-01	100.0%	45.7%
1kt1A03	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	34.0	3.45e-01	72.0%	66.5%
1txuA02	1.20.1050.80	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain	0.50	32.0	3.29e-01	90.1%	62.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3480326	109.40.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C	0.54	36.0	4.05e-01	99.4%	86.4%
5059668	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.54	32.0	3.83e-01	76.4%	87.6%
3875468	109.4.1.1396 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IPO5	0.54	36.0	2.87e-01	98.1%	31.6%
3626274	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	40.0	3.69e-01	97.5%	61.4%
3997722	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.50	46.0	4.02e-01	100.0%	73.8%

D2 high residues 310-440

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03216.19 best	Rhabdo_ncap_2	31.8	1.40e-07	64.1%	28.5%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.80	68.0	5.86e-01	100.0%	60.0%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.71	65.0	5.73e-01	100.0%	73.7%
2gjwC01	3.40.1350.150	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.61	36.0	3.57e-01	93.9%	53.6%
3m03B00	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.58	39.0	4.48e-01	99.2%	95.8%
1c5aA00	1.20.91.20	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system)	0.55	28.0	3.72e-01	83.2%	96.9%
3nbxX03	1.20.58.1510	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	30.0	3.32e-01	73.3%	70.3%
2dbhA01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.52	31.0	3.73e-01	99.2%	96.2%
1i6zA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.51	27.0	2.69e-01	71.0%	46.7%
5mj6A04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.50	43.0	3.27e-01	96.2%	74.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3993000	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.54	37.0	4.19e-01	100.0%	93.0%
3280578	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.52	38.0	3.13e-01	76.3%	80.4%
4976919	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.50	32.0	3.60e-01	96.2%	84.0%