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nucleocapsid_protein
Euk-VirMorogoro_maize-associated_virus
nucleocapsid_protein__YP_010087196__Morogoro_maize-associated_virus__2497337
Identity
- Accession:
- YP_010087196 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
70.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Alphanucleorhabdovirus›
Morogoro_maize-associated_virus
TaxID: 2497337
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 258-400
Domain cluster:
rep: nucleocapsid__YP_009289348__Sanxia_Water_Strider_Virus_5__1608064__D276-411
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 62.9 | 4.60e-17 | 57.3% | 29.5% |
D2
medium
residues 41-126_202-237
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6k2cA02 | 3.30.2410.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain | 0.52 | 25.0 | 2.64e-01 | 79.5% | 48.2% |
| 4kwaB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 39.0 | 3.32e-01 | 81.1% | 71.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4608944 | 2004.1.1.492 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, ADDB_N, PF27467 | 0.53 | 43.0 | 2.65e-01 | 86.9% | 27.6% |
| 223784 | 3581.1.1.0 ↗ | a+b complex topology › E3 ubiquitin-protein ligase SopA catalytic domain › E3 ubiquitin-protein ligase SopA catalytic domain › E3 ubiquitin-protein ligase SopA catalytic domain | 0.51 | 36.0 | 2.44e-01 | 81.1% | 19.7% |
| 4023600 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.51 | 44.0 | 2.88e-01 | 93.4% | 70.6% |
D3
medium
residues 127-201_238-253
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 52.5 | 7.00e-14 | 90.1% | 20.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4j8dD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 39.0 | 3.23e-01 | 71.4% | 35.8% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 37.0 | 4.13e-01 | 74.7% | 86.8% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 37.0 | 4.16e-01 | 87.9% | 88.1% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.57 | 38.0 | 4.21e-01 | 76.9% | 88.9% |
| 2l10A00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.57 | 40.0 | 3.35e-01 | 73.6% | 62.7% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.56 | 39.0 | 3.65e-01 | 73.6% | 76.0% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 39.0 | 3.40e-01 | 73.6% | 83.3% |
| 4bkxA01 | 4.10.1240.50 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.55 | 39.0 | 3.67e-01 | 75.8% | 59.3% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.55 | 39.0 | 3.93e-01 | 75.8% | 79.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3615313 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.59 | 40.0 | 4.25e-01 | 73.6% | 80.0% |
| 5078272 | 3542.1.1.1 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin | 0.58 | 40.0 | 2.86e-01 | 71.4% | 95.4% |
| 4395930 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.55 | 42.0 | 3.08e-01 | 82.4% | 46.4% |
| 3483040 | 1128.1.1.11 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Microp_apicomplexa_7 | 0.55 | 40.0 | 4.10e-01 | 79.1% | 78.9% |
| 4242867 | 544.1.1.2 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › SRA1 | 0.54 | 42.0 | 3.81e-01 | 84.6% | 92.8% |
| 3734404 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.53 | 41.0 | 4.30e-01 | 82.4% | 95.0% |
| 5053994 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.52 | 39.0 | 4.17e-01 | 80.2% | 97.3% |