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nucleocapsid_protein

Euk-Vir

Emaravirus_kiwii

nucleocapsid_protein__YP_010088070__Emaravirus_kiwii__2660760

Identity

Accession:: YP_010088070 ↗
Protein ID:: nucleocapsid_protein
Kingdom:: euk

Quality

79.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Fimoviridae› Emaravirus› Emaravirus_kiwii

TaxID: 2660760

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-73

PDB

D2 medium residues 74-161

PDB

Domain cluster: rep: putative_nucleocapsid_protein__YP_010088067__Emaravirus_cordylinae__2099567__D59-133

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25629.2 best	Fimo_NCAP	108.2	6.80e-31	100.0%	33.5%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1h0hA02	3.40.50.740	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.57	44.0	3.30e-01	85.2%	84.5%
1kqfA02	3.40.50.740	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	45.0	3.35e-01	88.6%	86.2%
1vq8V00	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	37.0	4.09e-01	88.6%	96.9%
1cmjA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.53	46.0	3.08e-01	100.0%	57.6%
2rn7A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	35.0	3.91e-01	89.8%	87.9%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4979752	2003.2.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3	0.58	46.0	3.22e-01	87.5%	69.2%
4967223	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.57	42.0	3.63e-01	77.3%	56.4%
4973468	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.57	42.0	3.63e-01	78.4%	55.7%
5074454	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.56	41.0	3.73e-01	77.3%	62.5%
3594109	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.56	41.0	3.50e-01	78.4%	56.0%
4661346	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.56	41.0	3.48e-01	77.3%	51.7%
4954219	2003.2.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin	0.56	43.0	3.06e-01	84.1%	71.2%
4971920	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.55	40.0	3.60e-01	77.3%	60.0%
4985469	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.55	40.0	3.49e-01	77.3%	56.0%
3588516	2003.1.9.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF	0.54	39.0	2.81e-01	77.3%	48.1%
3599620	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.54	39.0	3.63e-01	77.3%	65.2%
4978458	2003.2.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3	0.53	40.0	2.95e-01	83.0%	75.2%
3412615	109.27.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK	0.52	40.0	3.05e-01	94.3%	34.1%
3947139	2003.1.2.7 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2	0.51	40.0	2.79e-01	86.4%	89.4%
3952739	10.12.1.25 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH	0.51	38.0	2.78e-01	83.0%	61.8%

D3 medium residues 162-280

PDB

Domain cluster: rep: putative_nucleocapsid_protein__YP_010088067__Emaravirus_cordylinae__2099567__D171-282

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25629.2 best	Fimo_NCAP	184.6	3.30e-54	100.0%	44.7%