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nucleocapsid_protein
Euk-VirCapsicum_chlorosis_virus
nucleocapsid_protein__YP_717923__Capsicum_chlorosis_virus__163325
Identity
- Accession:
- YP_717923 ↗
- Protein ID:
- nucleocapsid_protein
- Kingdom:
- euk
Quality
72.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Tospoviridae›
Orthotospovirus›
Capsicum_chlorosis_virus
TaxID: 163325
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 33-168
Domain cluster:
rep: N__YP_009259256__Tospovirus_kiwifruit_YXW_2014__1857323__D7-21_34-140
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01533.23 best | Tospo_nucleocap | 232.1 | 9.30e-69 | 100.0% | 54.9% |
D2
medium
residues 169-226
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01533.23 best | Tospo_nucleocap | 93.0 | 2.80e-26 | 100.0% | 22.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.64 | 55.0 | 4.35e-01 | 98.3% | 71.5% |
| 4hstB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.58 | 40.0 | 3.18e-01 | 74.1% | 62.8% |
| 5dlqB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 49.0 | 2.93e-01 | 100.0% | 15.9% |
| 1miwA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 35.0 | 3.45e-01 | 86.2% | 62.5% |