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nucleopasid_protein
Euk-VirShuangao_Insect_Virus_2
nucleopasid_protein__YP_009664560__Shuangao_Insect_Virus_2__1608076
Identity
- Accession:
- YP_009664560 ↗
- Protein ID:
- nucleopasid_protein
- Kingdom:
- euk
Quality
62.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Phasmaviridae›
Shuangao_Insect_Virus_2
TaxID: 1608076
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-137
D2
high
residues 155-265_294-310
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q59A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.54 | 36.0 | 3.28e-01 | 79.7% | 48.8% |
| 2rgoB03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.53 | 34.0 | 3.63e-01 | 93.8% | 74.1% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 40.0 | 3.93e-01 | 81.2% | 90.2% |
| 4mlmA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 39.0 | 3.49e-01 | 78.1% | 83.5% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.53 | 46.0 | 4.41e-01 | 96.9% | 98.0% |
| 1vs5O00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.53 | 35.0 | 4.05e-01 | 86.7% | 98.9% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 44.0 | 3.40e-01 | 93.8% | 65.6% |
| 3eslA02 | 1.25.40.930 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 38.0 | 3.93e-01 | 82.0% | 82.4% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 36.0 | 3.94e-01 | 71.9% | 90.2% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 39.0 | 3.85e-01 | 82.0% | 95.7% |
| 1tjcA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 32.0 | 3.64e-01 | 90.6% | 86.3% |
| 1afsA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.50 | 41.0 | 3.10e-01 | 88.3% | 84.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963073 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.62 | 52.0 | 4.32e-01 | 91.4% | 76.4% |
| 5024540 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.58 | 44.0 | 4.22e-01 | 80.5% | 69.7% |
| 3942592 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.55 | 40.0 | 3.90e-01 | 75.0% | 69.6% |
| 3258339 | 101.1.10.12 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Spy1 | 0.55 | 43.0 | 4.18e-01 | 82.8% | 94.3% |
| 3505591 | 109.4.1.435 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RICTOR_N | 0.54 | 46.0 | 3.35e-01 | 93.8% | 38.6% |
| 4200901 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.53 | 28.0 | 3.10e-01 | 84.4% | 61.0% |
| 3818643 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.53 | 42.0 | 4.33e-01 | 97.7% | 87.2% |
| 3476361 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 41.0 | 4.26e-01 | 82.8% | 99.2% |
| 3971808 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.53 | 46.0 | 3.36e-01 | 96.9% | 81.6% |
| 3730789 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 46.0 | 3.75e-01 | 96.9% | 79.6% |
| 4013302 | 109.4.1.135 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3_N | 0.52 | 46.0 | 3.34e-01 | 96.9% | 95.3% |
| 3173164 | 109.4.1.486 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPM2 | 0.52 | 43.0 | 3.39e-01 | 94.5% | 42.6% |
| 4957479 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 41.0 | 3.55e-01 | 84.4% | 60.0% |
| 3197080 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 44.0 | 3.81e-01 | 96.1% | 91.2% |