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nucleoprotein,_partial

Euk-Vir

Wuhan_sharpbelly_bornavirus

nucleoprotein,_partial__YP_010085025__Wuhan_sharpbelly_bornavirus__2116489

Identity

Accession:: YP_010085025 ↗
Protein ID:: nucleoprotein,_partial
Kingdom:: euk

Quality

66.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Bornaviridae› Cultervirus› Wuhan_sharpbelly_bornavirus

TaxID: 2116489

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-218

PDB

D2 high residues 222-359

PDB

Domain cluster: rep: N__YP_009508485__Southwest_carpet_python_virus__2016402__D213-328

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06407.16 best	BDV_P40	54.6	1.20e-14	92.8%	30.4%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1n93X02	1.10.3050.10	Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 2 › borna disease virus nucleoprotein, domain 2	0.84	62.0	6.52e-01	94.2%	82.7%
5nl6A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	32.0	3.55e-01	79.0%	72.2%
3rf7A02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.55	40.0	3.77e-01	76.8%	87.2%
2bnmA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.54	24.0	3.15e-01	92.0%	74.3%
1qv9A02	6.10.140.120	Special › Helix non-globular › Helix Hairpins ›	0.53	34.0	3.83e-01	71.0%	84.5%
4m70I00	1.20.5.4130	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.52	32.0	3.54e-01	73.9%	76.9%
2lqgA00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	36.0	3.67e-01	77.5%	73.2%
7ae2A01	1.20.120.580	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like	0.51	34.0	3.50e-01	75.4%	70.1%
4dhiB02	1.20.1300.20	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2	0.50	36.0	3.56e-01	72.5%	79.3%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4845	566.1.1.5 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › BDV_P40	0.84	63.0	4.60e-01	94.9%	31.6%
1763953	566.1.1.3 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap	0.77	56.0	4.03e-01	76.8%	27.9%
2749214	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.76	64.0	4.50e-01	99.3%	31.4%
2769765	566.1.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap	0.72	62.0	4.36e-01	100.0%	31.9%
4822245	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.59	33.0	3.24e-01	73.2%	48.3%
3470828	601.1.2.4 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4	0.56	38.0	3.93e-01	77.5%	72.3%
3690443	192.4.1.0 ↗	alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p)	0.54	31.0	3.45e-01	77.5%	71.4%
3772076	601.1.2.47 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MARVEL	0.52	35.0	3.73e-01	76.1%	76.8%
4927302	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.51	32.0	3.24e-01	79.7%	61.4%