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nucleoprotein
Euk-VirTransmissible_gastroenteritis_virus
nucleoprotein__NP_058428__Transmissible_gastroenteritis_virus__11149
Identity
- Accession:
- NP_058428 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
68.5
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Coronaviridae›
Alphacoronavirus›
Transmissible_gastroenteritis_virus
TaxID: 11149
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-151
Domain cluster:
rep: nucleoprotein__YP_009199247__Swine_enteric_coronavirus__1766554__D39-151
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 155.8 | 2.40e-45 | 100.0% | 33.4% |
D2
high
residues 237-345
Domain cluster:
rep: nucleocapsid_protein__YP_005352875__Wigeon_coronavirus_HKU20__1159908__D197-280
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00937.24 best | CoV_nucleocap | 124.0 | 1.10e-35 | 100.0% | 31.7% |