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nucleoprotein
Euk-VirLymphocytic_choriomeningitis_mammarenavirus
nucleoprotein__NP_694852__Lymphocytic_choriomeningitis_mammarenavirus__11623
Identity
- Accession:
- NP_694852 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
73.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Mammarenavirus_choriomeningitidis
TaxID: 11623
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 360-549
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17290.9 best | Arena_ncap_C | 342.6 | 5.00e-103 | 91.0% | 97.8% |
D2
medium
residues 27-38_177-262
Domain cluster:
rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D166-254
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 166.9 | 8.50e-49 | 99.0% | 26.4% |
D3
medium
residues 39-85_164-176
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 73.9 | 1.60e-20 | 81.7% | 14.4% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.65 | 53.0 | 3.98e-01 | 93.3% | 50.6% |
| 3zheC01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 49.0 | 3.54e-01 | 93.3% | 55.4% |
| 3ozoA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 48.0 | 3.01e-01 | 96.7% | 51.3% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 44.0 | 3.99e-01 | 86.7% | 81.6% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.57 | 44.0 | 3.46e-01 | 86.7% | 64.3% |
| 3qybA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.57 | 42.0 | 3.29e-01 | 80.0% | 95.5% |
| 3u66A00 | 1.25.40.590 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU | 0.56 | 47.0 | 3.57e-01 | 100.0% | 69.6% |
| 4rg9B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 44.0 | 3.23e-01 | 86.7% | 35.9% |
| 6qm7K00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 45.0 | 3.11e-01 | 90.0% | 29.6% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 44.0 | 3.45e-01 | 95.0% | 77.9% |
| 3fndA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 43.0 | 2.88e-01 | 90.0% | 46.8% |
| 3rnrB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 41.0 | 2.85e-01 | 83.3% | 65.9% |
| 3wi7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 38.0 | 2.46e-01 | 78.3% | 29.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 406722 | 3248.1.1.1 ↗ | alpha complex topology › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › Arena_nucleocap | 0.93 | 88.0 | 5.35e-01 | 100.0% | 40.7% |
| 4142296 | 109.4.1.179 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nro1 | 0.68 | 56.0 | 4.07e-01 | 91.7% | 49.7% |
| 3223927 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 50.0 | 3.14e-01 | 86.7% | 25.5% |
| 3173914 | 109.4.1.1911 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30136 | 0.60 | 51.0 | 3.31e-01 | 96.7% | 23.3% |
| 3526105 | 604.3.1.18 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27519 | 0.58 | 49.0 | 4.35e-01 | 96.7% | 76.7% |
| 3621803 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 42.0 | 3.98e-01 | 85.0% | 80.0% |
D4
medium
residues 86-115_263-338
Domain cluster:
rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D1-21_80-113_255-329
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 137.6 | 6.90e-40 | 69.8% | 21.9% |
| PF00843.23 | Arena_nucleocap | 37.2 | 2.40e-09 | 30.2% | 9.3% |