nucleoprotein

Euk-Vir

Crimean-Congo_hemorrhagic_fever_orthonairovirus

nucleoprotein__NP_950237__Crimean-Congo_hemorrhagic_fever_orthonairovirus__1980519

Identity

77.6 mean pLDDT

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Nairoviridae› Orthonairovirus› Orthonairovirus_haemorrhagiae

TaxID: 1980519

View cluster (24 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 195-293

PDB

Domain cluster: rep: nucleoprotein__YP_009553334__Tunis_virus__1810944__D200-304

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	179.6	1.50e-52	100.0%	22.4%

D2 medium residues 1-52

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	86.9	1.90e-24	100.0%	11.7%

D3 medium residues 53-83_139-186_384-482

PDB

Domain cluster: rep: nucleocapside__YP_009111286__Leopards_Hill_virus__1381104__D44-75_156-179_418-493

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	109.7	2.30e-31	33.7%	13.1%
PF02477.21	Nairo_nucleo	81.6	7.70e-23	28.1%	10.8%
PF02477.21	Nairo_nucleo	54.1	1.70e-14	18.0%	7.0%

D4 medium residues 84-138_302-383

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02477.21 best	Nairo_nucleo	174.1	6.70e-51	60.6%	18.7%
PF02477.21	Nairo_nucleo	100.7	1.20e-28	42.3%	13.1%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2odmA00	1.10.287.750	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like	0.54	30.0	3.73e-01	96.4%	91.1%
2wy4A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	37.0	3.74e-01	94.2%	71.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4890819	3574.1.1.1 ↗	alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo	0.90	86.0	5.68e-01	100.0%	62.9%
1723600	3574.1.1.1 ↗	alpha complex topology › Nucleocapsid protein › Nucleocapsid protein › Nucleocapsid protein › Nairo_nucleo	0.89	86.0	5.66e-01	100.0%	61.4%
4588555	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	36.0	3.07e-01	70.1%	78.6%
1144728	604.12.1.2 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1	0.52	28.0	3.34e-01	90.5%	76.6%
3689570	5051.1.1.10 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2	0.51	38.0	2.60e-01	77.4%	71.7%