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nucleoprotein

Euk-Vir

European_bat_1_lyssavirus

nucleoprotein__YP_001285388__European_bat_1_lyssavirus__57482

Identity

Accession:: YP_001285388 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

82.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Lyssavirus› European_bat_lyssavirus_1

TaxID: 57482

Cluster

View cluster (144 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-231

PDB

Domain cluster: rep: nucleoprotein__YP_010084457__Lepeophtheirus_salmonis_rhabdovirus_127__1573761__D41-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	246.8	5.40e-73	100.0%	44.6%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.97	94.0	9.42e-01	99.5%	98.5%
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.86	78.0	8.03e-01	99.5%	98.9%
3fbzA01	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	31.0	4.14e-01	75.0%	79.4%
3nzpB03	1.20.58.930	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	25.0	3.72e-01	99.0%	92.4%
2mabA00	1.10.10.1350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain	0.58	27.0	3.46e-01	75.0%	74.3%
4dloB02	1.25.40.610	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	33.0	4.11e-01	95.3%	91.5%
7dvqK01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.57	33.0	3.46e-01	95.8%	61.3%
4hwhE00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.56	25.0	3.71e-01	80.7%	93.2%
3kfwX03	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	20.0	2.99e-01	79.2%	78.9%
2ongA01	1.50.10.130	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain	0.52	32.0	3.17e-01	98.4%	56.4%
3hn2A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.52	33.0	3.95e-01	95.8%	95.3%
3a06B03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.51	22.0	3.07e-01	89.1%	83.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.98	96.0	8.23e-01	100.0%	69.6%
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.98	96.0	7.36e-01	100.0%	52.0%
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.90	83.0	6.28e-01	100.0%	45.5%
3579321	109.4.1.2714 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_8, TPR_16	0.61	31.0	2.43e-01	98.4%	22.7%
3925921	109.4.1.823 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Htt_N-HEAT_1	0.59	37.0	2.82e-01	97.9%	28.7%
4001230	109.4.1.1264 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16	0.56	32.0	2.92e-01	98.4%	42.0%
3839691	4070.1.1.0 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like	0.54	27.0	3.09e-01	89.1%	61.4%
4014527	532.2.1.0 ↗	alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains	0.53	26.0	3.48e-01	95.3%	89.5%
3621552	109.4.1.210 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19	0.53	33.0	2.96e-01	99.0%	44.6%

D2 medium residues 256-353_395-451

PDB

Domain cluster: rep: nucleoprotein__YP_010229208__Almendravirus_cootbay__1972685__D274-348_379-429

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	155.0	4.00e-45	64.5%	23.9%