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nucleoprotein

Euk-Vir

Marburg_marburgvirus

nucleoprotein__YP_001531153__Marburg_marburgvirus__11269

Identity

Accession:: YP_001531153 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

61.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Filoviridae› Orthomarburgvirus› Orthomarburgvirus_marburgense

TaxID: 11269

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 227-363

PDB

Domain cluster: rep: N__YP_009508485__Southwest_carpet_python_virus__2016402__D213-328

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05505.18 best	Ebola_NP	310.8	3.10e-92	100.0%	18.2%
PF06407.16	BDV_P40	26.6	3.90e-06	97.1%	25.2%

D2 high residues 635-694

PDB

D3 medium residues 18-128

PDB

Domain cluster: rep: nucleoprotein__YP_003815432__Bundibugyo_ebolavirus__565995__D39-144

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05505.18 best	Ebola_NP	190.4	7.70e-56	100.0%	14.7%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4okoA00	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.59	45.0	3.37e-01	82.0%	75.5%
1qf9A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	45.0	3.77e-01	82.9%	99.0%
6ln3A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	44.0	3.67e-01	82.0%	99.5%
4bucA02	3.40.1190.10	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain	0.57	49.0	4.10e-01	96.4%	94.6%
4pk9A00	3.40.1090.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain	0.57	48.0	3.42e-01	93.7%	87.5%
2c42A02	3.40.50.920	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	45.0	4.07e-01	90.1%	92.4%
2ha8B01	3.40.1280.10	Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain	0.54	41.0	3.70e-01	81.1%	96.1%
1q14A01	3.40.50.1220	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain	0.54	45.0	3.80e-01	91.9%	82.3%
3mtjA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.53	40.0	3.44e-01	80.2%	86.0%
4xb1A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.52	40.0	3.48e-01	83.8%	96.2%
4v1ag00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.51	33.0	3.06e-01	100.0%	50.0%
1nriA00	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.51	40.0	3.23e-01	89.2%	65.3%
3tmgB01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.50	38.0	3.44e-01	81.1%	93.6%
4n4uB00	3.40.190.170	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7	0.50	43.0	3.14e-01	93.7%	79.5%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2476746	566.1.1.4 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Ebola_NP	0.89	81.0	5.39e-01	100.0%	28.0%
2522010	566.1.1.0 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related	0.87	82.0	5.51e-01	100.0%	30.7%
3284711	7579.1.1.9 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase	0.58	44.0	3.22e-01	82.0%	80.9%
4429420	7579.1.1.9 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase	0.56	43.0	3.11e-01	82.9%	67.2%
3803289	7579.1.1.6 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1	0.56	48.0	3.46e-01	96.4%	82.6%
3813528	7579.1.1.42 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4	0.55	47.0	3.43e-01	96.4%	82.4%
3288795	2003.1.3.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain	0.55	42.0	3.12e-01	80.2%	96.8%
3269741	2488.1.1.1 ↗	a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase	0.54	41.0	3.38e-01	81.1%	74.3%
4275105	2488.1.1.1 ↗	a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase	0.53	40.0	3.59e-01	82.0%	93.3%
4948952	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.52	39.0	3.00e-01	80.2%	40.7%
2429380	2002.1.1.41 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase	0.52	37.0	2.72e-01	75.7%	94.0%
4027601	2485.1.1.19 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8	0.51	34.0	3.40e-01	100.0%	64.3%
5070046	2004.1.1.191 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17	0.51	38.0	3.31e-01	81.1%	98.4%
4249160	2006.1.3.6 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2	0.50	37.0	3.60e-01	79.3%	84.6%

D4 medium residues 129-221

PDB

Domain cluster: rep: nucleoprotein__NP_066243__Zaire_ebolavirus__186538__D147-205_218-239

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05505.18 best	Ebola_NP	201.2	4.40e-59	100.0%	12.3%