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nucleoprotein

Euk-Vir

Bundibugyo_ebolavirus

nucleoprotein__YP_003815432__Bundibugyo_ebolavirus__565995

Identity

Accession:: YP_003815432 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

65.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Filoviridae› Orthoebolavirus› Bundibugyo_virus

TaxID: 565995

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 646-738

PDB

Domain cluster: rep: nucleoprotein__NP_066243__Zaire_ebolavirus__186538__D648-738

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05505.18 best	Ebola_NP	133.0	1.80e-38	95.7%	12.5%

D2 medium residues 39-144

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05505.18 best	Ebola_NP	167.3	7.70e-49	100.0%	14.1%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hxsA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	42.0	3.63e-01	82.1%	91.6%
3mtjA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.54	42.0	3.54e-01	83.0%	88.3%
2ywrA00	3.40.50.170	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain	0.53	43.0	3.49e-01	90.6%	100.0%
7nadx02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	46.0	3.61e-01	99.1%	69.2%
1gtvA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	39.0	3.25e-01	81.1%	100.0%
2x26A01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.50	37.0	3.12e-01	100.0%	44.9%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2476746	566.1.1.4 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Ebola_NP	0.97	89.0	5.75e-01	100.0%	26.1%
2522010	566.1.1.0 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related	0.94	91.0	5.98e-01	100.0%	29.3%
3602889	2004.1.1.191 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17	0.54	42.0	3.46e-01	83.0%	92.8%
4947959	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.54	41.0	3.47e-01	82.1%	97.9%
3807142	2003.1.1.3 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short	0.53	33.0	2.81e-01	71.7%	34.2%
4254912	2004.1.1.60 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI	0.53	41.0	3.53e-01	83.0%	99.4%
3238992	2004.1.1.414 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1	0.53	40.0	2.88e-01	82.1%	95.2%
5000484	2004.1.1.192 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18	0.52	40.0	3.46e-01	82.1%	100.0%
3264189	2007.2.3.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II	0.52	41.0	3.23e-01	85.8%	83.1%
4029287	2006.1.4.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like	0.52	36.0	2.76e-01	72.6%	82.5%
4218046	3949.1.1.1 ↗	alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT	0.50	44.0	3.36e-01	100.0%	47.9%

D3 medium residues 245-392

PDB

Domain cluster: rep: N__YP_009508485__Southwest_carpet_python_virus__2016402__D213-328

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05505.18 best	Ebola_NP	319.7	6.20e-95	100.0%	19.5%
PF06407.16	BDV_P40	28.8	8.40e-07	78.4%	30.1%