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nucleoprotein
Euk-VirCAS_virus
nucleoprotein__YP_006590087__CAS_virus__1223561
Identity
- Accession:
- YP_006590087 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Reptarenavirus›
CAS_virus
TaxID: 1223561
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 398-582
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17290.9 best | Arena_ncap_C | 128.4 | 2.90e-37 | 95.1% | 95.6% |
D2
medium
residues 1-21_80-113_255-329
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 40.9 | 1.70e-10 | 63.1% | 22.5% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t5qG01 | 1.10.150.550 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain | 0.89 | 69.0 | 7.72e-01 | 98.5% | 99.0% |
| 2vm6A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.53 | 36.0 | 3.48e-01 | 100.0% | 61.1% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.51 | 37.0 | 3.88e-01 | 76.9% | 96.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 406722 | 3248.1.1.1 ↗ | alpha complex topology › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › Arena_nucleocap | 0.92 | 89.0 | 6.35e-01 | 100.0% | 99.7% |
| 3925193 | 140.1.1.15 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g | 0.58 | 45.0 | 3.85e-01 | 82.3% | 88.8% |
| 3630000 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.57 | 44.0 | 3.77e-01 | 82.3% | 91.1% |
| 5058736 | 140.1.1.15 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g | 0.56 | 43.0 | 3.68e-01 | 80.8% | 87.9% |
| 3936918 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.56 | 42.0 | 3.82e-01 | 77.7% | 89.7% |
| 3248452 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.56 | 43.0 | 3.66e-01 | 80.8% | 93.5% |
| 3241580 | 140.1.1.15 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g | 0.56 | 43.0 | 3.74e-01 | 82.3% | 92.6% |
| 3677457 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.54 | 42.0 | 3.34e-01 | 82.3% | 73.1% |
| 4554350 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.53 | 40.0 | 3.39e-01 | 80.8% | 69.8% |
| 4980851 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 41.0 | 3.57e-01 | 81.5% | 78.0% |
| 3373909 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.51 | 42.0 | 2.78e-01 | 90.0% | 86.4% |
D3
medium
residues 22-79
Domain cluster:
rep: nucleoprotein__YP_009019205__University_of_Helsinki_virus__1382279__D13-88
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 31.0 | 1.80e-07 | 100.0% | 15.9% |
D4
medium
residues 166-254
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 49.0 | 5.90e-13 | 98.9% | 26.1% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lfuP00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 41.0 | 4.30e-01 | 88.8% | 79.3% |
| 5xyjA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.57 | 44.0 | 3.71e-01 | 84.3% | 98.7% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 48.0 | 4.81e-01 | 94.4% | 100.0% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.56 | 42.0 | 4.02e-01 | 80.9% | 79.4% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 46.0 | 4.53e-01 | 93.3% | 82.8% |
| 1iv8A04 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.55 | 46.0 | 4.49e-01 | 92.1% | 89.7% |
| 1oisA01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.54 | 43.0 | 4.35e-01 | 91.0% | 87.0% |
| 3k5wA01 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.53 | 40.0 | 3.15e-01 | 82.0% | 87.4% |
| 2ixnA02 | 1.20.120.1150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphotyrosyl phosphate activator, C-terminal lid domain | 0.53 | 40.0 | 3.83e-01 | 83.1% | 71.0% |
| 3qxyA02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.52 | 38.0 | 3.18e-01 | 77.5% | 91.6% |
| 3cp5A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 44.0 | 4.07e-01 | 95.5% | 80.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 406722 | 3248.1.1.1 ↗ | alpha complex topology › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › Arena_nucleocap | 0.93 | 88.0 | 5.75e-01 | 100.0% | 28.0% |
| 3334111 | 101.1.1.222 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Hrp3 | 0.63 | 49.0 | 4.45e-01 | 91.0% | 61.0% |
| 3798329 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.58 | 50.0 | 4.67e-01 | 95.5% | 95.5% |
| 3626320 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.58 | 49.0 | 4.63e-01 | 95.5% | 95.5% |
| 3248700 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.57 | 49.0 | 4.58e-01 | 95.5% | 92.7% |
| 3828350 | 219.1.1.48 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C65 | 0.54 | 37.0 | 2.72e-01 | 71.9% | 58.8% |
| 3503572 | 109.4.1.1711 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29567 | 0.53 | 40.0 | 3.10e-01 | 83.1% | 98.2% |
| 3881182 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.52 | 45.0 | 4.11e-01 | 97.8% | 87.5% |
| 3236728 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.50 | 40.0 | 3.33e-01 | 87.6% | 58.2% |