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nucleoprotein
Euk-VirIkoma_lyssavirus
nucleoprotein__YP_006742180__Ikoma_lyssavirus__1167696
Identity
- Accession:
- YP_006742180 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
75.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Lyssavirus›
Ikoma_lyssavirus
TaxID: 1167696
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-231
Domain cluster:
rep: nucleoprotein__YP_010084457__Lepeophtheirus_salmonis_rhabdovirus_127__1573761__D41-226
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 230.8 | 4.00e-68 | 100.0% | 44.4% |
D2
medium
residues 1-38_232-328_352-382
Domain cluster:
rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 159.3 | 2.10e-46 | 70.5% | 23.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.77 | 65.0 | 4.71e-01 | 86.1% | 88.5% |
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.76 | 65.0 | 4.78e-01 | 86.7% | 95.1% |
D3
medium
residues 329-351_397-450
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 41.0 | 3.03e-01 | 77.9% | 56.8% |
| 1xg7A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.56 | 43.0 | 3.55e-01 | 83.1% | 53.8% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.53 | 39.0 | 3.98e-01 | 100.0% | 79.5% |
| 1epuA03 | 1.25.40.60 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 34.0 | 2.97e-01 | 92.2% | 42.7% |
| 2b0cA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 26.0 | 2.80e-01 | 98.7% | 51.5% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 37.0 | 3.24e-01 | 100.0% | 51.3% |