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nucleoprotein
Euk-VirLunk_virus_NKS-1
nucleoprotein__YP_006858707__Lunk_virus_NKS-1__1134579
Identity
- Accession:
- YP_006858707 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
80.6
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Hareavirales›
Arenaviridae›
Mammarenavirus›
Lunk_virus_NKS-1
TaxID: 1134579
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 362-549
Domain cluster:
rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17290.9 best | Arena_ncap_C | 315.7 | 9.10e-95 | 91.0% | 96.7% |
D2
medium
residues 7-26_83-116_258-335
Domain cluster:
rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D1-21_80-113_255-329
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 142.6 | 2.00e-41 | 62.1% | 23.9% |
| PF00843.23 | Arena_nucleocap | 35.1 | 1.00e-08 | 28.0% | 9.9% |
D3
medium
residues 27-82_171-257
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00843.23 best | Arena_nucleocap | 162.0 | 2.50e-47 | 62.9% | 27.0% |
| PF00843.23 | Arena_nucleocap | 80.5 | 1.50e-22 | 39.9% | 16.8% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 34.0 | 4.42e-01 | 86.0% | 96.2% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 35.0 | 3.69e-01 | 88.1% | 71.8% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 36.0 | 3.60e-01 | 88.1% | 67.1% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 36.0 | 3.63e-01 | 88.1% | 70.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 406722 | 3248.1.1.1 ↗ | alpha complex topology › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › Arena_nucleocap | 0.98 | 96.0 | 7.00e-01 | 100.0% | 69.6% |
| 5039924 | 101.1.2.894 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2240 | 0.51 | 28.0 | 2.79e-01 | 98.6% | 49.7% |
| 4033804 | 604.12.1.51 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 5TM-5TMR_LYT | 0.50 | 36.0 | 3.31e-01 | 72.0% | 89.7% |