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nucleoprotein
Euk-VirEel_virus_European_X
nucleoprotein__YP_008686602__Eel_virus_European_X__685443
Identity
- Accession:
- YP_008686602 ↗
- Protein ID:
- nucleoprotein
- Kingdom:
- euk
Quality
85.8
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Perhabdovirus›
Eel_virus_European_X
TaxID: 685443
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 33-132
Domain cluster:
rep: nucleoprotein__YP_010229214__Almendravirus_balsa__1972684__D37-133
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 45.3 | 8.40e-12 | 98.0% | 19.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hhwK01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.91 | 79.0 | 6.26e-01 | 92.0% | 49.7% |
| 2gttC01 | 1.10.3570.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain | 0.80 | 68.0 | 5.40e-01 | 93.0% | 47.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966640 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.89 | 83.0 | 5.36e-01 | 100.0% | 24.8% |
| 2992377 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.81 | 74.0 | 4.94e-01 | 100.0% | 27.4% |
| 4846751 | 566.2.1.1 ↗ | alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap | 0.80 | 73.0 | 5.24e-01 | 100.0% | 36.6% |
| 5018926 | 131.1.1.40 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD-CE | 0.54 | 39.0 | 2.76e-01 | 77.0% | 72.8% |
D2
medium
residues 133-238
Domain cluster:
rep: nucleocapsid_protein__YP_009094340__Scophthalmus_maximus_rhabdovirus__936149__D129-226_273-284
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 58.8 | 6.70e-16 | 99.1% | 25.6% |
D3
medium
residues 239-345
Domain cluster:
rep: nucleocapsid_protein__YP_009551688__Merida-like_virus_KE-2017a__1969830__D268-379
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 113.7 | 1.40e-32 | 99.1% | 24.6% |
D4
medium
residues 374-428
Domain cluster:
rep: nucleoprotein__YP_009362111__Marco_virus__1158190__D382-436