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nucleoprotein

Euk-Vir

University_of_Helsinki_virus

nucleoprotein__YP_009019205__University_of_Helsinki_virus__1382279

Identity

Accession:: YP_009019205 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

73.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Arenaviridae› Reptarenavirus› University_of_Helsinki_virus

TaxID: 1382279

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 401-579

PDB

Domain cluster: rep: nucleoprotein__YP_010086252__Dante_Muikkunen_virus_1__2447916__D386-583

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17290.9 best	Arena_ncap_C	116.1	1.70e-33	95.0%	87.3%

D2 medium residues 13-88

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00843.23 best	Arena_nucleocap	38.0	1.30e-09	98.7%	20.1%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3layF00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.70	48.0	4.81e-01	71.1%	94.9%
3hgtA00	3.40.50.12360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.70	56.0	3.79e-01	88.2%	62.9%
4adnA01	1.20.1280.250	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.68	46.0	4.50e-01	71.1%	65.9%
8b6jF01	1.10.287.20	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain	0.67	47.0	4.97e-01	73.7%	86.6%
3a98A02	1.20.1270.350	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain	0.64	43.0	4.18e-01	71.1%	79.3%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.63	43.0	3.81e-01	72.4%	72.0%
6wfqC01	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.59	42.0	3.50e-01	76.3%	100.0%
6xxvC00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.58	41.0	3.63e-01	75.0%	82.0%
3ns4A00	1.10.357.110	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus	0.57	40.0	2.93e-01	72.4%	36.1%
3q5dA02	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.56	44.0	4.08e-01	85.5%	80.4%
4l8iB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.55	38.0	3.35e-01	71.1%	81.2%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
406722	3248.1.1.1 ↗	alpha complex topology › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › N-terminal domain in Lassa fever virus nucleoprotein › Arena_nucleocap	0.95	90.0	5.68e-01	100.0%	23.6%
4574041	4967.1.1.0 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases	0.59	42.0	3.33e-01	76.3%	82.4%
4378877	3711.1.1.20 ↗	alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DUF444	0.59	40.0	4.06e-01	71.1%	86.7%
5012157	605.1.1.354 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1	0.58	41.0	4.05e-01	77.6%	98.8%
3467737	7579.1.1.5 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10	0.57	47.0	2.89e-01	92.1%	57.2%
4059667	2006.1.4.8 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5	0.52	45.0	3.41e-01	98.7%	66.2%
4669918	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.52	36.0	2.55e-01	73.7%	21.6%

D3 medium residues 89-118_265-353_389-400

PDB

D4 medium residues 171-264

PDB

Domain cluster: rep: nucleoprotein__YP_006590087__CAS_virus__1223561__D166-254

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00843.23 best	Arena_nucleocap	44.0	2.00e-11	96.8%	26.4%