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nucleoprotein

Euk-Vir

Heartland_virus

nucleoprotein__YP_009047244__Heartland_virus__1216928

Identity

Accession:: YP_009047244 ↗
Protein ID:: nucleoprotein
Kingdom:: euk

Quality

94.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Bandavirus› Heartland_virus

TaxID: 1216928

Cluster

View cluster (83 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-124

PDB

Domain cluster: rep: putative_nucleoprotein__YP_009330282__Hubei_diptera_virus_5__1922886__D214-314

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05733.17 best	Tenui_N	70.9	1.70e-19	100.0%	40.6%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1hekA00	1.10.150.90	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17	0.68	48.0	4.41e-01	73.3%	71.6%
3tjtA01	1.10.287.990	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain	0.54	37.0	4.05e-01	72.2%	93.0%
3hjlA01	1.10.220.30	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain	0.53	38.0	3.96e-01	86.7%	82.4%
1sg6A02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.53	41.0	3.20e-01	83.3%	66.0%
2zcmA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	40.0	3.26e-01	83.3%	86.4%
1zvuA03	1.10.268.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3	0.52	38.0	3.29e-01	76.7%	51.4%
1zkrB00	1.20.920.50	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A ›	0.52	44.0	3.84e-01	96.7%	76.6%
8hk0A01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.52	36.0	3.31e-01	71.1%	68.9%
2f3oA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.51	42.0	2.55e-01	95.6%	45.5%
1lk3A00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.51	40.0	3.47e-01	100.0%	55.1%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.51	36.0	3.32e-01	74.4%	90.7%
1c5aA00	1.20.91.20	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system)	0.51	34.0	3.70e-01	90.0%	93.8%
3f4mA00	1.20.1440.160	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like	0.50	42.0	3.68e-01	100.0%	93.5%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1007268	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	1.00	97.0	6.69e-01	100.0%	36.3%
1030601	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.97	93.0	6.43e-01	100.0%	37.1%
3820015	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.89	84.0	5.83e-01	100.0%	39.5%
4019403	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.65	42.0	4.69e-01	97.8%	89.2%
3175804	101.1.1.3 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding	0.59	42.0	4.41e-01	86.7%	83.7%
3526522	101.1.1.50 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Nop16	0.52	37.0	4.08e-01	91.1%	98.5%
4170246	173.1.1.1 ↗	alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like › Uteroglobin	0.52	36.0	3.80e-01	73.3%	82.5%
3181221	106.1.1.1 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › Globin	0.51	40.0	3.37e-01	86.7%	51.2%

D2 high residues 130-244

PDB

Domain cluster: rep: nucleocapsid_protein__YP_010086239__Norway_phlebovirus_1__2034330__D328-441

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05733.17 best	Tenui_N	33.7	4.00e-08	81.7%	36.6%